1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgctttgtcctcgtcagtttatcttcaggtgtttctgtattttgattgacaatattttgtttctataaaatcttagtatcgcctattatgttattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATTATGCTGTTGGAAATATGATTTCTGATGCTTTTAAAAGAGTAGGCAGGA
species | Oryza sativa |
transcript | 13113.m00214 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58696091|gb|CK084778.1|CK084778
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58693133|gb|CK081820.1|CK081820
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58695701|gb|CK084388.1|CK084388
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTEST: gi|29668478|gb|CB664753.1|CB664753
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58612235|gb|CK039947.1|CK039947
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTEST: gi|58607710|gb|CK035743.1|CK035743
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58612432|gb|CK040144.1|CK040144
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|29625035|gb|CB630046.1|CB630046
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGGCTGAACTCACATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACGTGTGGCTGCAGTTAGTGCACGAGATGATEST: gi|29665658|gb|CB661933.1|CB661933
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|29644239|gb|CB649246.1|CB649246
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58688240|gb|CK076927.1|CK076927
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58689779|gb|CK078466.1|CK078466
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58587556|gb|CF985864.1|CF985864
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: GAAGACTGCTTCTGC-TTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58692874|gb|CK081561.1|CK081561
genomic: GAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58695949|gb|CK084636.1|CK084636
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58605670|gb|CK033703.1|CK033703
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATEST: gi|58691857|gb|CK080544.1|CK080544
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
EST: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAG ATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
genomic: AGAAGACTGCTTCTGCTTTGGTGTCTGAACTCAGATTGATGTCCCGGGAGgtatgctttg ... tattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGAT
tgacaatattttgtttctataaaatcttagtatcgcctattatgttattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATTATGCTGTTGGAAATATGATTTCTGATGCTTTTAAAAGAGTAGGCAGGA
ttattttct CT-rich tract
atattttgtttctata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttgtcctcgtcagtttatcttcaggtgtttctgtattttgattgacaatattttgtttctataaaatcttagtatcgcctattatgttattttctagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATTATGCTGTTGGAAATATGATTTCTGATGCTTTTAAAAGAGTAGGCAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT