1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' | 35 5' 3' | 36 5' 3' | 37 5' 3' | 38 5' 3' | 39 5' 3' | 40 5' 3' |
41 5' 3' | 42 5' 3' | 43 5' 3' | 44 5' 3' | 45 5' 3' | 46 5' 3' | 47 5' 3' | 48 5' 3' | 49 5' 3' | 50 5' 3' |
...atacaggaaaaactgaatataaaacaaagtcaattttgaatctgttgtatgtgctgcatctcattggagagtttttcatgtctctttttctgttcctcagAGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAGAATCTATTAGCATCGCAGAGGTTTATAATGTTGTTGATGCCTTATCAAA
species | Oryza sativa |
transcript | LOC_Os10g40780.1 |
intron # | 36 |
splice site | 3' |
intron type | U2 |
EST: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACA AGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAGEST: gi|29615806|gb|CB620818.1|CB620818
genomic: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACAgtaagttgag ... tgttcctcagAGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAG
EST: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACA AGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAGEST: gi|29629737|gb|CB634746.1|CB634746
genomic: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACAgtaagttgag ... tgttcctcagAGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAG
EST: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACA AGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAGEST: gi|29674318|gb|CB670593.1|CB670593
genomic: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACAgtaagttgag ... tgttcctcagAGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAG
EST: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACA AGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAGEST: gi|58604721|gb|CK015249.1|CK015249
genomic: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACAgtaagttgag ... tgttcctcagAGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAG
EST: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACA AGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAGEST: gi|58672055|gb|CK060741.1|CK060741
genomic: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACAgtaagttgag ... tgttcctcagAGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAG
EST: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACA AGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAG
genomic: TGGGGATTACAATGTTCATTTGGCGAAGATTATTGATGGCGGAAGAAACAgtaagttgag ... tgttcctcagAGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAG
tgtatgtgctgcatctcattggagagtttttcatgtctctttttctgttcctcagAGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAGAATCTATTAGCATCGCAGAGGTTTATAATGTTGTTGATGCCTTATCAAA
tttttcatgtctcttt CT-rich tract
tttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacaggaaaaactgaatataaaacaaagtcaattttgaatctgttgtatgtgctgcatctcattggagagtttttcatgtctctttttctgttcctcagAGGCTGCAACCGAGTTTGCTATATCACTTGTCCAGACATTGATTACCCAAGAATCTATTAGCATCGCAGAGGTTTATAATGTTGTTGATGCCTTATCAAA
- - aggaaaa
- - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - -ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - -tgctgca