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...aaagctatatcactcgaatgatttggcttcaaactagtgtgcatgaaggcttcccaagagcatacttgattttcttgctaacgctttgttgtttttacagGTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGATCCTAATAGTGCTTCCAAACGGCGAAAGATCAAGAGAGATCAGTCTGGTT
species | Oryza sativa |
transcript | LOC_Os01g68810.1 |
intron # | 33 |
splice site | 3' |
intron type | U2 |
EST: AAGATATTCGGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAG GTAGATGACCGGGATAGGGACAAAAGTACTATTGTGAAGGATGAAAGTGATEST: gi|29677532|gb|CB673807.1|CB673807
genomic: AAGATATTCGGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAGgtaaatgtgt ... gtttttacagGTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGAT
EST: AAGATATTCGGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAG GTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGATEST: gi|29668977|gb|CB665252.1|CB665252
genomic: AAGATATTCGGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAGgtaaatgtgt ... gtttttacagGTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGAT
EST: AAGATATTCGGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAG GTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGATEST: gi|29677533|gb|CB673808.1|CB673808
genomic: AAGATATTCGGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAGgtaaatgtgt ... gtttttacagGTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGAT
EST: AAGATATTCGGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAG GTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGATEST: gi|29677497|gb|CB673772.1|CB673772
genomic: AAGATATTCGGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAGgtaaatgtgt ... gtttttacagGTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGAT
EST: AAGATATTCGGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAG GTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGATEST: gi|29677535|gb|CB673810.1|CB673810
genomic: AAGATATTCGGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAGgtaaatgtgt ... gtttttacagGTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGAT
EST: GGGACAGAAAGCGTGAAGATAGGGAGGTTTTGTCAAGCAAG GTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGAT
genomic: GGGACAGAAAGCGTGAAGATAGGGATGTTTCGTCAAGCAAGgtaaatgtgt ... gtttttacagGTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGAT
aaggcttcccaagagcatacttgattttcttgctaacgctttgttgtttttacagGTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGATCCTAATAGTGCTTCCAAACGGCGAAAGATCAAGAGAGATCAGTCTGGTT
tgctaac putative branch site (score: 6)
ttgttttt putative PPT
ttgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagctatatcactcgaatgatttggcttcaaactagtgtgcatgaaggcttcccaagagcatacttgattttcttgctaacgctttgttgtttttacagGTAGATGACCGGGATAGGGACAAAAGTAGTATTGTGAAGGATGAAAGTGATCCTAATAGTGCTTCCAAACGGCGAAAGATCAAGAGAGATCAGTCTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - -tggcttc
- - - - - - - - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcatac