1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' |
gtacatccttggcagattaatacggatggtcatgggatgtctgcccctagttggacaaacccgagagagaattgtaacctaccactacaactatttcttttctgtttctggaatgtttgctaattgcatgttcttcatgcagAACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTAGACTTGAGAAATTTGAGTGACGTGCCGCCATCCAACACCAAGCAAGGGCCTGAAAAGTG
species | Oryza sativa |
transcript | LOC_Os07g06950.1 |
intron # | 32 |
splice site | 3' |
intron type | U2 |
EST: GACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACAACGCTAATCAG AACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTAGGACTTGAGAEST: gi|29630972|gb|CB635981.1|CB635981
genomic: GACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACAACGCTAATCAGgtacatcctt ... cttcatgcagAACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTA-GACTTGAGA
EST: GACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACAACGCTAATCAG AACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTAGACGTGAGAAEST: gi|86436747|gb|CI118469.1|CI118469
genomic: GACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACAACGCTAATCAGgtacatcctt ... cttcatgcagAACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTAGACTTGAGAA
EST: GACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACAACGCTAATCAG AACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTAGACTTGAGAAEST: gi|33677969|gb|CF306208.1|CF306208
genomic: GACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACAACGCTAATCAGgtacatcctt ... cttcatgcagAACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTAGACTTGAGAA
EST: GACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACAACGCTAATCAG AACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTAGACTTGAGAAEST: gi|8956463|gb|BE230378.1|BE230378
genomic: GACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACAACGCTAATCAGgtacatcctt ... cttcatgcagAACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTAGACTTGAGAA
EST: ACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACAACGGCTAATCAG AACCGC-ATTC-TTTGAGAGACCTGTAAAGATCTAT
genomic: ACTGGAGCATCCAGACACGGCTCCTAGAAAGACACACAACG-CTAATCAGgtacatcctt ... cttcatgcagAACCGCCATTCATTTGAGAGACCTGTAAAGATCTAT
caactatttcttttctgtttctggaatgtttgctaattgcatgttcttcatgcagAACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTAGACTTGAGAAATTTGAGTGACGTGCCGCCATCCAACACCAAGCAAGGGCCTGAAAAGTG
tgctaat putative branch site (score: 31)
tgttcttc putative PPT
atttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatccttggcagattaatacggatggtcatgggatgtctgcccctagttggacaaacccgagagagaattgtaacctaccactacaactatttcttttctgtttctggaatgtttgctaattgcatgttcttcatgcagAACCGCCATTCATTTGAGAGACCTGTAAAGATCTATAACTAGACTTGAGAAATTTGAGTGACGTGCCGCCATCCAACACCAAGCAAGGGCCTGAAAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG