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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctctctcgctcgtgtgaaagaaaaggcagatcttggtatagttgtaacatctgccttctggaagtatgaaaatcgtgttgtctcaactatttttctcagatttgttctcatagagtgttgaactgtacttcactacctggttgatctcctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATTAGGAGATTTCTTTGCATGTTGCTGCCCAGGAAGTAAACAAG

Basic information

species Oryza sativa
transcript LOC_Os04g51610.1
intron # 32
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g51610.1 (Oryza sativa), 3'ss of exon 32
lower sequence: GRMZM2G140328_T03 (Zea mays), 3'ss of exon 32
gtaagctctctcgctcgtgtgaaagaaaaggcagatcttggtatagttgtaacatctgccttctggaagtatgaaaatcgtgttgtctcaactatttttctcagatttgttctcatagagtgttgaactgtacttcactacctggttgatctcctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATTAGGAGATTTCTTTGCATGTTGCTGCCC------AGGAAGTAAACAAG
                                        |||  ||| |  ||| ||| | |||     |||||| |  |     |   || |  ||||||    |   |||             | ||  | | |  |     || || | || |  ||||||||||| ||||||| ||||| |||||||| ||||| ||  |  | ||||| ||||| ||||||||||| |||||          || || |||||||
----------------------------------------gtaaggtttt--catatgcttgctg-----atgaaattgatagaaccatgac-acgtttctc----tccctct-------------attgcgcctgatcattccctt-atttgctct--gcagCTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATTGGGAGAATTCTTTGCATGCTGCTGTATCTGCAAGGGGAGCAAACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113930978|gb|DQ884075.1|DQ884075
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|86514508|gb|CI157141.1|CI157141
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|33679973|gb|CF308212.1|CF308212
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88908814|gb|CI714956.1|CI714956
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCNCTGTCCCACAGAGACCAT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCC-CTGTCCCAGAGAGACCAT
EST: gi|25806928|gb|CA762889.1|CA762889
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88675260|gb|CI727375.1|CI727375
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGAACATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88465476|gb|CI520028.1|CI520028
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|29685708|gb|CB681983.1|CB681983
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88670519|gb|CI724635.1|CI724635
EST:     AGACTCACCTGCCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|86520016|gb|CI160222.1|CI160222
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|87027607|gb|CI272372.1|CI272372
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88672065|gb|CI726181.1|CI726181
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88668585|gb|CI719542.1|CI719542
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|86518067|gb|CI158273.1|CI158273
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTT-AG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88413135|gb|CI523696.1|CI523696
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|87008601|gb|CI315059.1|CI315059
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88520187|gb|CI447841.1|CI447841
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGTTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|33679974|gb|CF308213.1|CF308213
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|29636718|gb|CB641727.1|CB641727
EST:     TGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: TGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88670760|gb|CI724876.1|CI724876
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|15855986|gb|BI808798.1|BI808798
EST:     GACTCACTCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: GACTCAC-CTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88906188|gb|CI375260.1|CI375260
EST:     AGACTCACCTGGCACTTGTGGTTGGTGTCAATAG-TCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGGTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|86869526|gb|CI346386.1|CI346386
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|29679578|gb|CB675853.1|CB675853
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|89165805|gb|CI102895.1|CI102895
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|29667908|gb|CB664183.1|CB664183
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCCCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|86864770|gb|CI344275.1|CI344275
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88291646|gb|CI537432.1|CI537432
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|163928563|gb|EG710872.1|EG710872
EST:     GGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: GGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|86837156|gb|CI347654.1|CI347654
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|86858245|gb|CI271129.1|CI271129
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88276833|gb|CI395996.1|CI395996
EST:     CTCACCTGGCACTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCCTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: CTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|86839057|gb|CI330416.1|CI330416
EST:     AGACTCACCTGGCACTTGTGGTTGGTGTCAATGGGTCTCCCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|86481862|gb|CI124495.1|CI124495
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|86835264|gb|CI346739.1|CI346739
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|89172069|gb|CI721128.1|CI721128
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|29688806|gb|CB685081.1|CB685081
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88673496|gb|CI727609.1|CI727609
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTCGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88276259|gb|CI396863.1|CI396863
EST:     CACCTGGCACTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: CACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88672274|gb|CI726390.1|CI726390
EST:     AGACTCACCTGCCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88973103|gb|CI717632.1|CI717632
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88908488|gb|CI713047.1|CI713047
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGAACATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88670407|gb|CI724523.1|CI724523
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTNCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
EST: gi|88677117|gb|CI731230.1|CI731230
EST:     AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG                         CTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT
genomic: AGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 58 (upstream exon), 59 (downstream exon)
Score: 17

GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAGgtaagctctc ... ctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATTAGGAGATTTCTTTGCATGTTGCTGCCCAGGAAGTAAACAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctcatagagtgttgaactgtacttcactacctggttgatctcctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATTAGGAGATTTCTTTGCATGTTGCTGCCCAGGAAGTAAACAAG
                                   ggttgat  putative branch site (score: 17)
                                         tctcctttat  CT-rich tract
                                              tttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagctctctcgctcgtgtgaaagaaaaggcagatcttggtatagttgtaacatctgccttctggaagtatgaaaatcgtgttgtctcaactatttttctcagatttgttctcatagagtgttgaactgtacttcactacctggttgatctcctttatgcagCTGGCCGTTGGCATTTGTGGGAAAGCTTATCCCTGTCCCAGAGAGACCATTAGGAGATTTCTTTGCATGTTGCTGCCCAGGAAGTAAACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC