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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaaacccaccgtaataattcctccttactatatctgttactgggccctatagctgtttatatggagctgaattgatctagatctgttattggcttcacatctgttaatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG

Basic information

species Oryza sativa
transcript LOC_Os04g51610.1
intron # 31
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g51610.1 (Oryza sativa), 3'ss of exon 31
lower sequence: GRMZM2G140328_T04 (Zea mays), 3'ss of exon 31
gtagaaaacccaccgtaataattcctccttactatatctgttactgggccctatagctgtttatatggagctgaattgatctagatctgttattggc-------ttcacatctgttaatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG--------
                             ||  || |||   |   |   |     || | |  |   || | |||| || ||| | | || ||  |       ||    |||||| || |  |||||||||| ||||||||||||||||||||| | || ||    || || |  ||||||||||||||||| || |||||||| || || ||  |        
----------------------------gtagaatctctagaatgagtttc-----ctttcttaactaagataaatttatttaggtgttttgttctcacattcttttgtttctgtttatatttagGCGCTTATCGTTGAGTTCCTTGGCAAGTTTGCCTCAACGGTAAGGCTAAGTTGGCAGTTGTGGTTGGTATCGATAGGTCTTGCTTTCTTCGGGTAAGGTT

upper sequence: LOC_Os04g51610.1 (Oryza sativa), 3'ss of exon 31
lower sequence: GRMZM2G140328_T02 (Zea mays), 3'ss of exon 30
gtagaaaacccaccgtaataattcctccttactatatctgttactgggccctatagctgtttatatggagctgaattgatctagatctgttattggc-------ttcacatctgttaatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG
                             ||  || |||   |   |   |     || | |  |   || | |||| || ||| | | || ||  |       ||    |||||| || |  |||||||||| ||||||||||||||||||||| | || ||    || || |  ||||||||||||||||| || |||||||| || || ||  |
----------------------------gtagaatctctagaatgagtttc-----ctttcttaactaagataaatttatttaggtgttttgttctcacattcttttgtttctgtttatatttagGCGCTTATCGTTGAGTTCCTTGGCAAGTTTGCCTCAACGGTAAGGCTAAGTTGGCAGTTGTGGTTGGTATCGATAGGTCTTGCTTTCTTCGG

upper sequence: LOC_Os04g51610.1 (Oryza sativa), 3'ss of exon 31
lower sequence: GRMZM2G391042_T01 (Zea mays), 3'ss of exon 31
gtagaaaacccaccgtaataattcctccttactatatctgttactgggccctatagctgtttatatggagctgaattgatctagatctgttattggc-----ttcacatctgttaatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG
                             ||  || |||   |  |  | |     || | |  |   || | ||||||| ||| | |  | ||  |     ||    |||||| ||||  |||||||||| ||||||||||| ||||||||| | || |||   || || |  |||||| |||||||||| || |||||||| || || || ||
----------------------------gtagaatctctagaatggatctc-----ctttcttaaccaagataaattgatttaggtgtactgttttcacacttttgtttctgtttatgtttagGCGCTTATCGTTGAGTTCCTCGGCAAGTTTGCCTCAACAGTTAGGCTAAGTTGGCAGCTGTGGTTGGTATCGATAGGTCTTGCTTTCTTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|113930978|gb|DQ884075.1|DQ884075
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|86514508|gb|CI157141.1|CI157141
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|33679973|gb|CF308212.1|CF308212
EST:     ATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: ATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88908814|gb|CI714956.1|CI714956
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTCGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|25806928|gb|CA762889.1|CA762889
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88675260|gb|CI727375.1|CI727375
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88465476|gb|CI520028.1|CI520028
EST:     TAACAGTTGTACTGCAG                         GCGGTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|29685708|gb|CB681983.1|CB681983
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88670519|gb|CI724635.1|CI724635
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|86520016|gb|CI160222.1|CI160222
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAATAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|87027607|gb|CI272372.1|CI272372
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88672065|gb|CI726181.1|CI726181
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88668585|gb|CI719542.1|CI719542
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|86518067|gb|CI158273.1|CI158273
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88413135|gb|CI523696.1|CI523696
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|87008601|gb|CI315059.1|CI315059
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88520187|gb|CI447841.1|CI447841
EST:     CATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|33679974|gb|CF308213.1|CF308213
EST:     CATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88670760|gb|CI724876.1|CI724876
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|15855986|gb|BI808798.1|BI808798
EST:     TGTTGCCATAACAGTTGTACTGCA-                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACT
genomic: TGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCAC-
EST: gi|88906188|gb|CI375260.1|CI375260
EST:     CTGGGAACCATCTCTTTATGGCCATTTTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|86869526|gb|CI346386.1|CI346386
EST:     TTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|29679578|gb|CB675853.1|CB675853
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|89165805|gb|CI102895.1|CI102895
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|29667908|gb|CB664183.1|CB664183
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTTCTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|86864770|gb|CI344275.1|CI344275
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88291646|gb|CI537432.1|CI537432
EST:     AGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: AGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|86837156|gb|CI347654.1|CI347654
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|86858245|gb|CI271129.1|CI271129
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGGCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|86481862|gb|CI124495.1|CI124495
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|86835264|gb|CI346739.1|CI346739
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|89172069|gb|CI721128.1|CI721128
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|29688806|gb|CB685081.1|CB685081
EST:     CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: CTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88673496|gb|CI727609.1|CI727609
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATTGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88672274|gb|CI726390.1|CI726390
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88973103|gb|CI717632.1|CI717632
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88908488|gb|CI713047.1|CI713047
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88670407|gb|CI724523.1|CI724523
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
EST: gi|88677117|gb|CI731230.1|CI731230
EST:     TTGTTGCCATAACAGTTGTACTGCAG                         GCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC
genomic: TTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 65 (upstream exon), 58 (downstream exon)
Score: 14

TGAATTCAATGCTAGGAAGCCCGATGAGCTGAACATATTCAAGGGCATTACTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTGTACTGCAGgtagaaaacc ... taatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggagctgaattgatctagatctgttattggcttcacatctgttaatgtgcagGCGCTTATTGTTGAGTTCCTTGGCAAGTTTACATCGACAACCAGACTCACCTGGCAGTTGTGGTTGGTGTCAATAGGTCTCGCCTTTTTTAG
                                          tgttaat  putative branch site (score: 14)
          aattgat  TA-rich tract