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gtatacgcttatgactcctactaactgacatgtgaacagtgggcattttctgacaacaatttgaataaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTAC
species | Oryza sativa |
transcript | LOC_Os01g56490.1 |
intron # | 31 |
splice site | 3' |
intron type | U2 |
EST: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAG AACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAEST: gi|86826737|gb|CI364258.1|CI364258
genomic: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTA
EST: CTTGTCCAATCAG AACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAEST: gi|88838574|gb|CI375122.1|CI375122
genomic: CTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTA
EST: TGCTTGTCCAATCAG AACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAEST: gi|88267518|gb|CI379453.1|CI379453
genomic: TGCTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTA
EST: AAGGTCATGCTTGTCCAATCAG AACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAEST: gi|88465709|gb|CI524659.1|CI524659
genomic: AAGGTCATGCTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTA
EST: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAG AACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAEST: gi|33810375|gb|CF331078.1|CF331078
genomic: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTA
EST: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAG AACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAEST: gi|33812341|gb|CF332060.1|CF332060
genomic: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTA
EST: GTCACCCC-AAAAGGTCATGCTTGTCCAATCAG AACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAEST: gi|218495798|gb|FG954256.1|FG954256
genomic: GTCACCCCAAAAAGGTCATGCTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTA
EST: GACTTGAGCACTCAGACGTCATCCCAAAAAGGTCATGCTTGTCCAATCAG AACCGCAATTCTTTCGATAAGGCTGTGAEST: gi|33810373|gb|CF331077.1|CF331077
genomic: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTCGATAAGGCTGTGA
EST: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAG AACCGCAATTCTTTCEST: gi|86887682|gb|CI311889.1|CI311889
genomic: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTC
EST: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAG AACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAEST: gi|9865065|gb|AU100815.1|AU100815
genomic: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTA
EST: GACTTGAGCACTCAGNCGTCACCCCAAAAAGGTCATGCTTGTCCAATCAG AACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTA
genomic: GACTTGAGCACTCAGACGTCACCCCAAAAAGGTCATGCTTGTCCAATCAGgtatacgctt ... taaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTA
ctaactgacatgtgaacagtgggcattttctgacaacaatttgaataaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTAC
aacaatttgaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacgcttatgactcctactaactgacatgtgaacagtgggcattttctgacaacaatttgaataaattacagAACCGCAATTCTTTCGATAAGGCTGTGAAGATTTTCAACTAGAGGTGGTTAAATTATCACATTTATGTGATGTATCCAGAGCTCTCACCTGCCGTAGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT