1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtatatgtatacaagagtagatatacagtttacttatagcacagtaatcttagttaattgattggcaaatcattttaactcaaaaaaatatatatttcagGTGGACCGGAAATACAAGCATTATTACCACCAAATGCAAACCGTGGTTTCATCGTTTGATGTGGTAGCTGGACCAGGATCTGCGAAGCCTTACACAGCAG
species | Oryza sativa |
transcript | LOC_Os12g43950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCAAGAGCTTCATAACAAAATGGCAAAACTGATGGCAATGTTGGATGAG GTGGACCGGAAATACAAGCATTATTACCACCAAATGCAAACCGTGGTTTCAEST: gi|33674940|gb|CF303179.1|CF303179
genomic: AGCAAGAGCTTCAGAACAAAATGGCAAAACTGATGGCAATGTTGGATGAGgtgagtactc ... tatatttcagGTGGACCGGAAATACAAGCATTATTACCACCAAATGCAAACCGTGGTTTCA
EST: AGCAAGAGCTTCAGAACAAAATGGCAAAACTGATGGCAATGTTGGATGAG GTGGACCGGAAATACAAGCATTATTACCACCAAATGCAAACCGTGGTTTCAEST: gi|58695144|gb|CK083831.1|CK083831
genomic: AGCAAGAGCTTCAGAACAAAATGGCAAAACTGATGGCAATGTTGGATGAGgtgagtactc ... tatatttcagGTGGACCGGAAATACAAGCATTATTACCACCAAATGCAAACCGTGGTTTCA
EST: TGGC-ATGTTGGATGAG GTGGACCGGAAATACAAGCATTATTACCACCAAATGCAAACCGTGGTTTCA
genomic: TGGCAATGTTGGATGAGgtgagtactc ... tatatttcagGTGGACCGGAAATACAAGCATTATTACCACCAAATGCAAACCGTGGTTTCA
aatcttagttaattgattggcaaatcattttaactcaaaaaaatatatatttcagGTGGACCGGAAATACAAGCATTATTACCACCAAATGCAAACCGTGGTTTCATCGTTTGATGTGGTAGCTGGACCAGGATCTGCGAAGCCTTACACAGCAG
ttttaac putative branch site (score: 2)
aaatcattttaactca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgtatacaagagtagatatacagtttacttatagcacagtaatcttagttaattgattggcaaatcattttaactcaaaaaaatatatatttcagGTGGACCGGAAATACAAGCATTATTACCACCAAATGCAAACCGTGGTTTCATCGTTTGATGTGGTAGCTGGACCAGGATCTGCGAAGCCTTACACAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA