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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgttaaaccctagctaggactttgccggtgcttaattgtttgtgttgtgatgtacattgtttggttatgcagACAAGAAGGCGTTCCCTGGCTTGGCCATTCTTGGGTGGTACTCCATTGACACTCATGTGACGAACACCGATATGGAAACCAACCAGGCT

Basic information

species Oryza sativa
transcript LOC_Os12g42730.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675549|gb|CB671824.1|CB671824
EST:     CGACCCCGGAACCCTCGACCGCGACTTGTTGAAGAAGAAGCTCGAGACCT                         ACAAGAAGGCGTTCCCTGGCTTGGCCATTCTTGGGTGGTACTCCATTGACA
genomic: CGACCCCGGAACCCTCGACCGCGACTTGTTGAAGAAGAAGCTCGAGACCTgtaagttgtt ... ggttatgcagACAAGAAGGCGTTCCCTGGCTTGGCCATTCTTGGGTGGTACTCCATTGACA
EST: gi|27577018|gb|CA999712.1|CA999712
EST:     CGACCCCGGAACCCTCGACCGCGACTTGTTGAAGAAGAAGCTCGAGACCT                         ACAAGAAGGCGTTCCCTGGCTTGGCCATTCTTGGGTGGTACTCCATTGACA
genomic: CGACCCCGGAACCCTCGACCGCGACTTGTTGAAGAAGAAGCTCGAGACCTgtaagttgtt ... ggttatgcagACAAGAAGGCGTTCCCTGGCTTGGCCATTCTTGGGTGGTACTCCATTGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactttgccggtgcttaattgtttgtgttgtgatgtacattgtttggttatgcagACAAGAAGGCGTTCCCTGGCTTGGCCATTCTTGGGTGGTACTCCATTGACACTCATGTGACGAACACCGATATGGAAACCAACCAGGCT
            gcttaat  putative branch site (score: 4)
              ttaattgttt  TA-rich tract