1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caaaaatgcttttataagtgatttttttcctctgtacttggtatgaacttgagatttgaaaatttgtcctttcctctaattgttctttatctgcttgcagTTCCCCCTGCTTTCAAAGAGTGCCATCCTGGGAAGATTGATTGAGGAGAATTCAGACAGCGATGAATGTGTCATCATATTGTCTGACATCCCTGGTGGCG
species | Oryza sativa |
transcript | LOC_Os12g41910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGACGATGTTCTTGTTGAGAGTTGGGGAGATGTCTTTCCACCTTCACAAG TTCCCCCTGCTTTCAAAGAGTGCCATCCTGGGAAGATTGATTGAGGAGAATEST: gi|58663815|gb|CK052501.1|CK052501
genomic: AG-CGATGTTCTTGTTGAG-GTTGGGGAGATGTCTTTCCACCTTCACAAGgtaaattgct ... ctgcttgcagTTCCCCCTGCTTTCAAAGAGTGCCATCCTGGGAAGATTGATTGAGGAGAAT
EST: CCAGCGATGTTCTTGTTGAGGTTGGGGAGATGTCTTTCCACCTTCACAAG TTCCCCCTGCTTTCAAAGAGTGCCATCCTGGGAAGATTGATTGAGGAGAATEST: gi|58678371|gb|CK067058.1|CK067058
genomic: CCAGCGATGTTCTTGTTGAGGTTGGGGAGATGTCTTTCCACCTTCACAAGgtaaattgct ... ctgcttgcagTTCCCCCTGCTTTCAAAGAGTGCCATCCTGGGAAGATTGATTGAGGAGAAT
EST: CCAGCGATGTTCTTGTTGAGGTTGGGGAGATGTCTTTCCACCTTCACAAG TTCCCCCTGCTTTCAAAGAGTGCCATCCTGGGAAGATTGATTGAGGAGAAT
genomic: CCAGCGATGTTCTTGTTGAGGTTGGGGAGATGTCTTTCCACCTTCACAAGgtaaattgct ... ctgcttgcagTTCCCCCTGCTTTCAAAGAGTGCCATCCTGGGAAGATTGATTGAGGAGAAT
aacttgagatttgaaaatttgtcctttcctctaattgttctttatctgcttgcagTTCCCCCTGCTTTCAAAGAGTGCCATCCTGGGAAGATTGATTGAGGAGAATTCAGACAGCGATGAATGTGTCATCATATTGTCTGACATCCCTGGTGGCG
ctctaat putative branch site (score: 3)
ttctttatctgctt putative PPT
agatttgaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaaatgcttttataagtgatttttttcctctgtacttggtatgaacttgagatttgaaaatttgtcctttcctctaattgttctttatctgcttgcagTTCCCCCTGCTTTCAAAGAGTGCCATCCTGGGAAGATTGATTGAGGAGAATTCAGACAGCGATGAATGTGTCATCATATTGTCTGACATCCCTGGTGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - aatgctt
- - - - - - - - - - - - - - - - -gtacttg