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...ctattttgaattatacagttaaaattgttcttatgtctttccattaagaagtcattggcacaatatctggtactactttatgatattattccttttatagGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAG
species | Oryza sativa |
transcript | LOC_Os12g41715.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGACCTT GTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATCEST: gi|29665871|gb|CB662146.1|CB662146
genomic: TTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGACCTTgtgagtttta ... ccttttatagGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATC
EST: TTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGACCTT GTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATC
genomic: TTCAGAGACTCACCCAGAAATACCTTAAGAATCCTGTTACAATTGACCTTgtgagtttta ... ccttttatagGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATC
aagaagtcattggcacaatatctggtactactttatgatattattccttttatagGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAG
ttattcctttt CT-rich tract
tttatgatattattcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctattttgaattatacagttaaaattgttcttatgtctttccattaagaagtcattggcacaatatctggtactactttatgatattattccttttatagGTGGGTGAAGATGATCAGAAGCTAGCAGAAGGAATCAGTCTTTATTCTATCGCTTCAGAGGGCCATGCCAAACCTGCTGTCCTTGGAGAATTGATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - ttgttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaata