1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgggctgcgcttcgttcaacatcgcacgtgcaatctttgacacacctgaataattccctgttatttcatatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATCTTATTGAAGGGCTGGCGGAAAACGATTTATTGCATTATACCCATTTATT
species | Oryza sativa |
transcript | LOC_Os12g40830.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATAC------AG GGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATCEST: gi|88448481|gb|CI693864.1|CI693864
genomic: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGGTAGAGgtgggctgcg ... catatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATC
EST: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGG--G-- --TACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATCEST: gi|88301040|gb|CI592220.1|CI592220
genomic: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGGTAGAGgtgggctgcg ... catatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATC
EST: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGG--G-- --TACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATCEST: gi|88443713|gb|CI591938.1|CI591938
genomic: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGGTAGAGgtgggctgcg ... catatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATC
EST: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGG--G-- --TACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATCEST: gi|88580749|gb|CI697698.1|CI697698
genomic: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGGTAGAGgtgggctgcg ... catatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATC
EST: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGG--G-- --TACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATCEST: gi|88424098|gb|CI689800.1|CI689800
genomic: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGGTAGAGgtgggctgcg ... catatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATC
EST: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGG--G-- --TACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATCEST: gi|88335844|gb|CI645445.1|CI645445
genomic: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGGTAGAGgtgggctgcg ... catatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATC
EST: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGG--G-- --TACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATCEST: gi|66924011|gb|CX110859.1|CX110859
genomic: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGGTAGAGgtgggctgcg ... catatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATC
EST: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATAC------AG GGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATC
genomic: TGATGTGGATCCGATAAACTCGGTACAGTTTTCTAATCATACAGGTAGAGgtgggctgcg ... catatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATC
tcgcacgtgcaatctttgacacacctgaataattccctgttatttcatatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATCTTATTGAAGGGCTGGCGGAAAACGATTTATTGCATTATACCCATTTATT
ctttgac putative branch site (score: 2)
ttccctgttatttc putative PPT
ttatttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggctgcgcttcgttcaacatcgcacgtgcaatctttgacacacctgaataattccctgttatttcatatcccagGGTACCCAACATTTAGAGGACAGGTCCTCAACGGCAGTCAGCTGTGGGATCTTATTGAAGGGCTGGCGGAAAACGATTTATTGCATTATACCCATTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG