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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgagtgacactcttggtgcaatatgcttagttatctactgtactcatgtgatatctgtaggttatctccaatcactttttggtatatattcaatcagATTTGAGAACATTGGTGTCCGAAAGCCTTCTAGTGATGACATAAAGATAACTGGAATTAGTCATCCACATGATTTCAGGAAGGTACTAAACATTTTGATT

Basic information

species Oryza sativa
transcript LOC_Os12g38480.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g38480.3 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G179281_T01 (Zea mays), 3'ss of exon 3
-------------------------------------aaatgagtgacactcttggtgcaatatgcttagttatctactgtac--tcatgtgatatctgtaggttatctccaatcactttttggtatatattcaatcagATTTGAGAACATTGGTGTCCGAAAGCCTTCTAGTGATGACATAAAGATAACTGGAATTAGTCATCCACATGATTTCAGGAAGGTACTAAACATTTTGATT
                                      | ||||  ||| ||||    || ||   | |  ||| |  |  |   ||| ||||| ||||||| ||||||||||||  |||||||| ||||||| |||||  ||||||| ||| ||||| |||||||| |||||  |||  |||| || |||||  ||  |||                                     
tctcatttgcattaaatagtttgttcatcataattgttagtgag-aacagtcttttcccacta-attcaagtatttgttacatgttcacgtgatttctgtagATTATCTCCAATCCATTTTTGGTGTATATTCGATCAGGATTGAGAATATTAGTGTCAGAAAGCCTCCTAGTTGTGATGTAAAAATTACTGGGGTTGCTCA-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660980|gb|CB657255.1|CB657255
EST:     TGAGAAGCATGTTGTCCTTCATTCAGTTTCTGATATTGTTGTCGAACAAG                         ATTTGAGAACATTGGTGTCCGAAAGCCTTCTAGTGATGACATAAAGATAAC
genomic: TGAGAAGCATGTTGTCCTTCATTCAGTTTCTGATATTGTTGTCGAACAAGgtaagctgaa ... attcaatcagATTTGAGAACATTGGTGTCCGAAAGCCTTCTAGTGATGACATAAAGATAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcatgtgatatctgtaggttatctccaatcactttttggtatatattcaatcagATTTGAGAACATTGGTGTCCGAAAGCCTTCTAGTGATGACATAAAGATAACTGGAATTAGTCATCCACATGATTTCAGGAAGGTACTAAACATTTTGATT
                                 tttttggtatatatt  TA-rich tract