1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgcgtggtcctaaagttcaagaacagattttccttcctgttctttgtcacattgatcacgtgtctgcaagatatagagtttcaggatataatattttttggtctggttgtatgttattaagcagctgtgtgcctttgtgcactaaatctaagtttctgtacatctctacagCATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCTCCGCCGTGTCATTGAAGCACTGCTCAATTCAATCGGAGCGCCGTTCCAG
species | Oryza sativa |
transcript | LOC_Os12g37550.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATGTGCGCTCTATCGTCTTTGAAGGAAGAGCTATGCCTGAATTTTTAAG CATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCTEST: gi|88845861|gb|CI084591.1|CI084591
genomic: AATGTGCGCTCTATCGTCTTTGAAGGAAGAGCTATGCCTGAATTTTTAAGgtgcgtggtc ... atctctacagCATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCT
EST: CTTTGAAGGAAGAGCTATGCCTGAATTTTTAAG CATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCTEST: gi|88972148|gb|CI018595.1|CI018595
genomic: CTTTGAAGGAAGAGCTATGCCTGAATTTTTAAGgtgcgtggtc ... atctctacagCATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCT
EST: AATGTGCGCTCTATCGTCTTTGAAGGAAGAGCTATGCCTGAATTTTTAAG CATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCTEST: gi|29625269|gb|CB630280.1|CB630280
genomic: AATGTGCGCTCTATCGTCTTTGAAGGAAGAGCTATGCCTGAATTTTTAAGgtgcgtggtc ... atctctacagCATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCT
EST: AATGTGCGCTCTATCGTCTTTGAAGGAAGAGCTATGCCTGAATTTTTAAG CATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCTEST: gi|88225148|gb|CI225064.1|CI225064
genomic: AATGTGCGCTCTATCGTCTTTGAAGGAAGAGCTATGCCTGAATTTTTAAGgtgcgtggtc ... atctctacagCATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCT
EST: TCTTTGAAGGAAGAGCTATGCCTGAATTTTTAAG CATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCT
genomic: TCTTTGAAGGAAGAGCTATGCCTGAATTTTTAAGgtgcgtggtc ... atctctacagCATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCT
ttaagcagctgtgtgcctttgtgcactaaatctaagtttctgtacatctctacagCATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCTCCGCCGTGTCATTGAAGCACTGCTCAATTCAATCGGAGCGCCGTTCCAG
cactaaa putative branch site (score: 27)
catctct putative PPT
taaatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtggtcctaaagttcaagaacagattttccttcctgttctttgtcacattgatcacgtgtctgcaagatatagagtttcaggatataatattttttggtctggttgtatgttattaagcagctgtgtgcctttgtgcactaaatctaagtttctgtacatctctacagCATTCTTACAGGGTGGGGAAAGCATAGCAGGATTGCTGGTGCAAGCACCCTCCGCCGTGTCATTGAAGCACTGCTCAATTCAATCGGAGCGCCGTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC