1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcagttgaagttgcaaacaatcgcagttaaatataattcagaagtcaagtgtgaaattatgaacaaaacctgatcatggcttcatattgttctgcagGCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAACCCGAGCTGCGGTCACAGATGGAGAGAATGAGATCAATTTGTAGTCAACC
species | Oryza sativa |
transcript | LOC_Os12g37370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAG GCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAACEST: gi|88244084|gb|CI243206.1|CI243206
genomic: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAGgtcagttgaa ... tgttctgcagGCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAAC
EST: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAG GCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAACEST: gi|112787231|gb|EE592303.1|EE592303
genomic: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAGgtcagttgaa ... tgttctgcagGCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAAC
EST: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAG GCCACTGCCCAGAGGGGEST: gi|88209253|gb|CI208679.1|CI208679
genomic: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAGgtcagttgaa ... tgttctgcagGCCACTGCC-AGAGGGG
EST: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAG GCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAACEST: gi|88977504|gb|CI025240.1|CI025240
genomic: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAGgtcagttgaa ... tgttctgcagGCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAAC
EST: AGGCGGTCCGGTGCTCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAG GCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAACEST: gi|86906467|gb|CI294590.1|CI294590
genomic: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAGgtcagttgaa ... tgttctgcagGCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAAC
EST: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAG GCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAACEST: gi|33817973|gb|CF334814.1|CF334814
genomic: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAGgtcagttgaa ... tgttctgcagGCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAAC
EST: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAG GCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAAC
genomic: AGGCGGTCCGGTGCGCGGTCTGTGGCCACGGCGAGGCCGTGTTCTTCCAGgtcagttgaa ... tgttctgcagGCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAAC
agtcaagtgtgaaattatgaacaaaacctgatcatggcttcatattgttctgcagGCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAACCCGAGCTGCGGTCACAGATGGAGAGAATGAGATCAATTTGTAGTCAACC
acctgat putative branch site (score: 2)
ttgttct putative PPT
aaattatgaacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttgaagttgcaaacaatcgcagttaaatataattcagaagtcaagtgtgaaattatgaacaaaacctgatcatggcttcatattgttctgcagGCCACTGCCAGAGGGGAGGAAGGGATGACCCTGTTCTTCGTCTGCTGCAACCCGAGCTGCGGTCACAGATGGAGAGAATGAGATCAATTTGTAGTCAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA