Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctttgtaactgaagtgcttgtctctagtcttagtactgatatcaatattttggcaacacttggatggtttagcacccacctttgtttcagGGGGATGACCAAATTACAACGTCAGTGAGTGGCCGTGTAGATGATCTCGCCTTCCGTTGCTCATCTGACACATATGATCTCGACGACCGCGCTTTGGTTA

Basic information

species Oryza sativa
transcript LOC_Os12g35350.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88313811|gb|CI597442.1|CI597442
EST:     ACAGCTCTAAGAGTCCTTCAGGGCTTGTGAAGCACCTCAGCCTGCCTAAT                         GGGGATGACCAAATTACAACGTCAGTGAGTGGCCGTGTAGATGATCTCGCC
genomic: ACAGCTCTAAGAGTCCTTCAGGGCTTGTGAAGCACCTCAGCCTGCCTAATgtgagccttt ... tttgtttcagGGGGATGACCAAATTACAACGTCAGTGAGTGGCCGTGTAGATGATCTCGCC
EST: gi|33675705|gb|CF303944.1|CF303944
EST:     ACAGCTCTAAGAGTCCTTCAGGGCTTGTGAAGCACCTCAGCCTGCCTAAT                         GGGGATGACCAAATTACAACGTCAGTGAGTGGCCGTGTAGATGATCTCGCC
genomic: ACAGCTCTAAGAGTCCTTCAGGGCTTGTGAAGCACCTCAGCCTGCCTAATgtgagccttt ... tttgtttcagGGGGATGACCAAATTACAACGTCAGTGAGTGGCCGTGTAGATGATCTCGCC
EST: gi|66916955|gb|CX103803.1|CX103803
EST:     ACAGCTCTAAGAGTCCTTCAGGGCTTGTGAAGCACCTCAGCCTGCCTAAT                         GGGGATGACCAAATTACAACGTCAGTGAGTGGCCGTGTAGATGATCTCGCC
genomic: ACAGCTCTAAGAGTCCTTCAGGGCTTGTGAAGCACCTCAGCCTGCCTAATgtgagccttt ... tttgtttcagGGGGATGACCAAATTACAACGTCAGTGAGTGGCCGTGTAGATGATCTCGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatatcaatattttggcaacacttggatggtttagcacccacctttgtttcagGGGGATGACCAAATTACAACGTCAGTGAGTGGCCGTGTAGATGATCTCGCCTTCCGTTGCTCATCTGACACATATGATCTCGACGACCGCGCTTTGGTTA
 tactgat  putative branch site (score: 2)
                                       cccacctttgtttc  putative PPT
     atcaatatttt  TA-rich tract