1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agtttactttattcagtagctacagcaaactaattgctgtatccattattattgtcctaattattcagtagatcagaaaactcacatgttggatcttcagGCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTCTTTTCCCTGGAGTGGCCTGCTTCCTTGTTGCAGTCATTCTTGGCTCTGC
species | Oryza sativa |
transcript | LOC_Os12g31850.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGACTGAGGTCATCAGCTCAAGTATGGTTGTTGTAATAG GCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTCEST: gi|29614658|gb|CB619671.1|CB619671
genomic: TGACTGAGGTCATCAGCTCAAGTATGGTTGTTGTAATAGgtaggtaaaa ... ggatcttcagGCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTC
EST: AGGTCTCTCAGTGACTGAGGTCATCAGCTCAAGTATGGTTGTTGTAATAG GCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTCEST: gi|88299367|gb|CI572319.1|CI572319
genomic: AGGTCTCTCAGTGACTGAGGTCATCAGCTCAAGTATGGTTGTTGTAATAGgtaggtaaaa ... ggatcttcagGCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTC
EST: AGGTCTCTCAGTGACTGAGGTCATCAGCTCAAGTATGGTTGTTGTAATAG GCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTCEST: gi|29665274|gb|CB661549.1|CB661549
genomic: AGGTCTCTCAGTGACTGAGGTCATCAGCTCAAGTATGGTTGTTGTAATAGgtaggtaaaa ... ggatcttcagGCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTC
EST: AGGTCTCTCAGTGACTGAGGTCATCAGCTCAAGTATGGTTGTTGTAATAG GCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTCEST: gi|29614656|gb|CB619669.1|CB619669
genomic: AGGTCTCTCAGTGACTGAGGTCATCAGCTCAAGTATGGTTGTTGTAATAGgtaggtaaaa ... ggatcttcagGCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTC
EST: AGGTCTCTCAGTGACTGAGGTCATCAGCTCAAGTATGGTTGTTGTAATAG GCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTC
genomic: AGGTCTCTCAGTGACTGAGGTCATCAGCTCAAGTATGGTTGTTGTAATAGgtaggtaaaa ... ggatcttcagGCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTC
ttattattgtcctaattattcagtagatcagaaaactcacatgttggatcttcagGCACAACACTGAATTATTTCCTGGACAACCGCATCAACAGAGCAGAGATTCTTTTCCCTGGAGTGGCCTGCTTCCTTGTTGCAGTCATTCTTGGCTCTGC
aactcac putative branch site (score: 2)
tcttc putative PPT
taattattca TA-rich tract