1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gattgcatgatcttaattttactcctatgttaagtgttgtcctatagatctgtacctgtttgaagagagaacttataatttgtactgaccgttcttacagACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCTAGGCCTTTGAAAGATGTTATTCTGGTTTCTTATGAGATTATTCATAAAA
species | Oryza sativa |
transcript | LOC_Os12g30020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGA ACAATTGCCACAGTTAGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCTEST: gi|58668632|gb|CK057318.1|CK057318
genomic: TCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGAgtaagtactt ... gttcttacagACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCT
EST: TCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGA ACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCTEST: gi|33674887|gb|CF303126.1|CF303126
genomic: TCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGAgtaagtactt ... gttcttacagACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCT
EST: TCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGA ACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCTEST: gi|33675720|gb|CF303959.1|CF303959
genomic: TCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGAgtaagtactt ... gttcttacagACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCT
EST: TCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGA ACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCTEST: gi|58656723|gb|CK045403.1|CK045403
genomic: TCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGAgtaagtactt ... gttcttacagACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCT
EST: GTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGA ACAATTGCCACAGTGTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCTEST: gi|29677818|gb|CB674093.1|CB674093
genomic: GTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGAgtaagtactt ... gttcttacagACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCT
EST: TCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGA ACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCT
genomic: TCTGTCACCGTTTTTACCTTCGTCAGTCCCATGCAAAAAATGATAGACGAgtaagtactt ... gttcttacagACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCT
agatctgtacctgtttgaagagagaacttataatttgtactgaccgttcttacagACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCTAGGCCTTTGAAAGATGTTATTCTGGTTTCTTATGAGATTATTCATAAAA
tactgac putative branch site (score: 1)
ccgttctt CT-rich tract
aacttataatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgcatgatcttaattttactcctatgttaagtgttgtcctatagatctgtacctgtttgaagagagaacttataatttgtactgaccgttcttacagACAATTGCCACAGTTTGCATGTTCTTGGCTGGAAAAGTTGAAGAGACGCCTAGGCCTTTGAAAGATGTTATTCTGGTTTCTTATGAGATTATTCATAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG