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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtggtgtaactatgtcggagcctgtcttattttatttgcctaagcaacttgaacattaatgaaccaatttaatagcagtaataaattcaagaattatggtagtcgtgggtggttagttttaattgttagctccttctctgtttgctggttctgtgtggggtttttcagATGGTGACGACCAGGAGAAATGCTGCTACCGGTGATGGCAACCAACCCGAAGGCAGCAACCACAACCACCAGGGCAACCCACCTCCACCTCCACCTCCGC

Basic information

species Oryza sativa
transcript LOC_Os12g28990.1
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttttaattgttagctccttctctgtttgctggttctgtgtggggtttttcagATGGTGACGACCAGGAGAAATGCTGCTACCGGTGATGGCAACCAACCCGAAGGCAGCAACCACAACCACCAGGGCAACCCACCTCCACCTCCACCTCCGC
   ttttaat  putative branch site (score: 3)
                                               tttttc  putative PPT
     ttaattgtta  TA-rich tract