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gtcagttgggagagctgcctccgttagaattgaacatcttaacttgagatgtttcttgcatgctgaatttgttgacagagcggagtatattgaaactgaaactttttggatatacatcagGTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGGTGGCCATTAAGATCATCAGAGGCATTAAGAAGTACAGGGATGCTGCAAT
species | Oryza sativa |
transcript | LOC_Os12g27520.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAGGATTAATGCAAAAATGGGTGAAG GTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGGEST: gi|29665166|gb|CB661441.1|CB661441
genomic: ACAGGATTAATGCAAAAATGGGTGAAGgtcagttggg ... tatacatcagGTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGG
EST: ACAGGATTAATGCAAAAATGGGTGAAG GTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGGEST: gi|29668017|gb|CB664292.1|CB664292
genomic: ACAGGATTAATGCAAAAATGGGTGAAGgtcagttggg ... tatacatcagGTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGG
EST: ACAGGATTAATGCAAAAATGGGTGAAG GTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGGEST: gi|29689119|gb|CB685394.1|CB685394
genomic: ACAGGATTAATGCAAAAATGGGTGAAGgtcagttggg ... tatacatcagGTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGG
EST: ACAGGATTAATGCAAAAATGGGTGAAG GTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGG
genomic: ACAGGATTAATGCAAAAATGGGTGAAGgtcagttggg ... tatacatcagGTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGG
aatttgttgacagagcggagtatattgaaactgaaactttttggatatacatcagGTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGGTGGCCATTAAGATCATCAGAGGCATTAAGAAGTACAGGGATGCTGCAAT
tgttgac putative branch site (score: 3)
tatattgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttgggagagctgcctccgttagaattgaacatcttaacttgagatgtttcttgcatgctgaatttgttgacagagcggagtatattgaaactgaaactttttggatatacatcagGTACCTTTGGTCAGGTATTGGAATGTTGGGATAGGGAAAGGAAAGAAATGGTGGCCATTAAGATCATCAGAGGCATTAAGAAGTACAGGGATGCTGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC