Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaattagatcatactgttaacagatggaaatttgaggtacacttttaaatcatcaggttaattatgcttaacataattagctgttatttatcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGAGAATACAAGGACACAGGGAAACAGTTCAATATACTAGCAGCTGCATGGA

Basic information

species Oryza sativa
transcript LOC_Os12g26290.5
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g26290.6 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G312997_T01 (Zea mays), 3'ss of exon 2
----ttaattagatcatactgttaacagatggaaatttgaggtacacttttaaatcatcaggttaattatgcttaacataattagctgttatttatcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGAGAATACAAGGACACAGGGAAACAGTTCAATATACTAGCAGCTGCATGGA
    ||||||||||| ||||||||||||||||||| |||||||| ||||| ||||||||||    ||||||| ||| ||||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
ctttttaattagatcgtactgttaacagatggaaaattgaggtatactttgaaatcatcag----attatgcataaaataattaactgttatttatcgatgtagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGAGAATACAAGGACACAGGAAAACAGTTCAATATACTAGCAGCTGCATGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29614999|gb|CB620012.1|CB620012
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29625915|gb|CB630926.1|CB630926
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29673746|gb|CB670021.1|CB670021
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29627764|gb|CB632775.1|CB632775
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29673709|gb|CB669984.1|CB669984
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29613656|gb|CB618669.1|CB618669
EST:     CGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: CGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|33676616|gb|CF304855.1|CF304855
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29623660|gb|CB628671.1|CB628671
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29626272|gb|CB631283.1|CB631283
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29622413|gb|CB627424.1|CB627424
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|88367577|gb|CI568349.1|CI568349
EST:     AAACACCTTTTTTGGGAGAAACATGGAGCCGGTTTGAT-AACAGGATGAG                         TTGATGAGCCCAGATC
genomic: AAACACCTTTTTTGGGAGAAACATGGAGCCGGTT-GATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATC
EST: gi|29674051|gb|CB670326.1|CB670326
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29622490|gb|CB627501.1|CB627501
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29625519|gb|CB630530.1|CB630530
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29625911|gb|CB630922.1|CB630922
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29625830|gb|CB630841.1|CB630841
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29613620|gb|CB618633.1|CB618633
EST:     CGGTTGATCAAAAGGCTGTG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: CGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29614956|gb|CB619969.1|CB619969
EST:     AAAACACCTTTTTTGGGATATATATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29626293|gb|CB631304.1|CB631304
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|88572787|gb|CI664358.1|CI664358
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29679634|gb|CB675909.1|CB675909
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29623589|gb|CB628600.1|CB628600
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|25778063|gb|CA752815.1|CA752815
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29613584|gb|CB618597.1|CB618597
EST:     CGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: CGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29677261|gb|CB673536.1|CB673536
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29627804|gb|CB632815.1|CB632815
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29626125|gb|CB631136.1|CB631136
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29628820|gb|CB633831.1|CB633831
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29624043|gb|CB629054.1|CB629054
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|25778087|gb|CA752839.1|CA752839
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29627901|gb|CB632912.1|CB632912
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|33675586|gb|CF303825.1|CF303825
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29628685|gb|CB633696.1|CB633696
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29628226|gb|CB633237.1|CB633237
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29625787|gb|CB630798.1|CB630798
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|25778064|gb|CA752816.1|CA752816
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCG-CAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29627802|gb|CB632813.1|CB632813
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29623658|gb|CB628669.1|CB628669
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|88302021|gb|CI667867.1|CI667867
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29627242|gb|CB632253.1|CB632253
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29627625|gb|CB632636.1|CB632636
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29623848|gb|CB628859.1|CB628859
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29622060|gb|CB627071.1|CB627071
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|33675591|gb|CF303830.1|CF303830
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
EST: gi|29629207|gb|CB634218.1|CB634218
EST:     AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAAAAGGATGAG                         TTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA
genomic: AAAACACCTTTTTTGGGAGAAACATGGAGCCGGTTGATCAACAGGATGAGgtactacttc ... atcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatcatcaggttaattatgcttaacataattagctgttatttatcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGAGAATACAAGGACACAGGGAAACAGTTCAATATACTAGCAGCTGCATGGA
                     gcttaac  putative branch site (score: 3)
             ttaattatgcttaaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttaattagatcatactgttaacagatggaaatttgaggtacacttttaaatcatcaggttaattatgcttaacataattagctgttatttatcggcgcagTTGATGAGCCCAGATCCATTTGTTGTGGCGACAAAGCTGTTAGCCAGGAGAGAATACAAGGACACAGGGAAACAGTTCAATATACTAGCAGCTGCATGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA