1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctaaaattaatatgttagagaaggaaagatgtatgcattagtagcatgtgtatttaattctggggttgtatgttaagccgtgatcttcctgtatatgcagTGTATTAGCATGTAA
species | Oryza sativa |
transcript | LOC_Os12g24230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
atgtgtatttaattctggggttgtatgttaagccgtgatcttcctgtatatgcagTGTATTAGCATGTAA
atttaat putative branch site (score: 4)
tcttcctgt putative PPT
tatttaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaaattaatatgttagagaaggaaagatgtatgcattagtagcatgtgtatttaattctggggttgtatgttaagccgtgatcttcctgtatatgcagTGTATTAGCATGTAA
- - - - - - - - - -gaaggaaa
- - - - - - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - - - - - catgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtatg