1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagcagcaaactattgtaattttagttatttctgggatatatatgaatctgttttcctgctattttccctccacaatagGCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTACATCATCAAAATCCTTCCGTGGTCCTGGTCTGGAGGAAGGCCTGAAG
species | Oryza sativa |
transcript | LOC_Os12g10784.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGCATGTCCTGAAGATGGCAAAACACATCGAAGGCATCACAACCAA GCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTACEST: gi|33681873|gb|CF310112.1|CF310112
genomic: GAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAAgtgagcagca ... tccacaatagGCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTAC
EST: GAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAA GCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTACEST: gi|88433551|gb|CI594365.1|CI594365
genomic: GAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAAgtgagcagca ... tccacaatagGCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTAC
EST: GAGGAGCATGTCCTGAAGATGGCAAAACGCATCAAAGGCATCACAACCAA GCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTACEST: gi|58589242|gb|CF987550.1|CF987550
genomic: GAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAAgtgagcagca ... tccacaatagGCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTAC
EST: GAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAA GCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTACEST: gi|41883464|gb|BX928437.1|BX928437
genomic: GAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAAgtgagcagca ... tccacaatagGCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTAC
EST: GAGGAGCATGTCCTGAAGATGGCCAAACACATCAAAGGCATCACAACCAA GCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTACEST: gi|88332901|gb|CI639749.1|CI639749
genomic: GAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAAgtgagcagca ... tccacaatagGCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTAC
EST: GAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAA GCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTAC
genomic: GAGGAGCATGTCCTGAAGATGGCAAAACACATCAAAGGCATCACAACCAAgtgagcagca ... tccacaatagGCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTAC
gttatttctgggatatatatgaatctgttttcctgctattttccctccacaatagGCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTACATCATCAAAATCCTTCCGTGGTCCTGGTCTGGAGGAAGGCCTGAAG
tctgttttcctgctat CT-rich tract
atatatatgaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcagcaaactattgtaattttagttatttctgggatatatatgaatctgttttcctgctattttccctccacaatagGCTTGGTCTGCCACTTGTGTTCAAGTCCAGCTTTGATAAAGCAAATCGTACATCATCAAAATCCTTCCGTGGTCCTGGTCTGGAGGAAGGCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG