1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagtagacagtacagtcacttgtgtctcaccttgtctgtactgtagtctctgtcactaaatgagctaatttgcccttatgttctccagACAGAGGTTACTACTGTTGTATGTGGTCAGAAAGAACTGAAAAAAATGATTGATATAAGTGGGCAGCTTGACACAGTAAAGCGAGTTATCTATATCAATG
species | Oryza sativa |
transcript | LOC_Os12g07110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATCTACGCCTCCTTGGGAGAGGAAGCACTGTGCCACTCACTAAATGAG ACAGAGGTTACTACTGTTGTATGEST: gi|29672200|gb|CB668475.1|CB668475
genomic: CAATCTACGCCTCCTTGGGAGAGGAAGCACTGTGCCACTCACTAAATGAGgtaagtagac ... tgttctccagACAGAGGTTACTACTGTTGTATG
EST: CAATCTACGCCTCCTTGGGAGAGGAAGCACTGTGCCACTCGCTAAATGAG ACAGAGGTTACTACTGATGTATGTGGTCAGAAAGAACTGNNNNNNNTGATTEST: gi|29614987|gb|CB620000.1|CB620000
genomic: CAATCTACGCCTCCTTGGGAGAGGAAGCACTGTGCCACTCACTAAATGAGgtaagtagac ... tgttctccagACAGAGGTTACTACTGTTGTATGTGGTCAGAAAGAACTGAAAAAAATGATT
EST: CAATCTACGCCTCCTTGGGAGAGGAAGCACTGTGCCACTCACTAAATGAG ACAGAGGTTACTACTGTTGTATGTGGTCAGAAAGAACTGNNNNNNNTGATTEST: gi|29614944|gb|CB619957.1|CB619957
genomic: CAATCTACGCCTCCTTGGGAGAGGAAGCACTGTGCCACTCACTAAATGAGgtaagtagac ... tgttctccagACAGAGGTTACTACTGTTGTATGTGGTCAGAAAGAACTGAAAAAAATGATT
EST: CAATCTACGCCTCCTTGGGAGAGGAAGCACTGTGCCACTCACTAAATGAG ACAGAGGTTACTACTGTTGTATGTGGTCAGAAAGAACTGNNNNNNNTGATTEST: gi|29675499|gb|CB671774.1|CB671774
genomic: CAATCTACGCCTCCTTGGGAGAGGAAGCACTGTGCCACTCACTAAATGAGgtaagtagac ... tgttctccagACAGAGGTTACTACTGTTGTATGTGGTCAGAAAGAACTGAAAAAAATGATT
EST: CAATCTACGCCTCCTTGGGAGAGGAAGCACTGTGCCACTCACTAAATGAG ACAGAGGTTACTACTGTTGTATGTGGTCAGAAAGAACTGNNNNNNNTGATT
genomic: CAATCTACGCCTCCTTGGGAGAGGAAGCACTGTGCCACTCACTAAATGAGgtaagtagac ... tgttctccagACAGAGGTTACTACTGTTGTATGTGGTCAGAAAGAACTGAAAAAAATGATT
gtctgtactgtagtctctgtcactaaatgagctaatttgcccttatgttctccagACAGAGGTTACTACTGTTGTATGTGGTCAGAAAGAACTGAAAAAAATGATTGATATAAGTGGGCAGCTTGACACAGTAAAGCGAGTTATCTATATCAATG
cccttatgttctcc CT-rich tract
taattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagacagtacagtcacttgtgtctcaccttgtctgtactgtagtctctgtcactaaatgagctaatttgcccttatgttctccagACAGAGGTTACTACTGTTGTATGTGGTCAGAAAGAACTGAAAAAAATGATTGATATAAGTGGGCAGCTTGACACAGTAAAGCGAGTTATCTATATCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT