1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acttctgtccaatgttggcactatgttgaaatgttgaatcatgctctatctactgaaactacttattcccactcctttatttcatcaaaatggtctatagGGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGCGATTCAACCATGATAGTAACAACTG
species | Oryza sativa |
transcript | LOC_Os12g07020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGAG GGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGCEST: gi|29666613|gb|CB662888.1|CB662888
genomic: GATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGAGgtaactattc ... tggtctatagGGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGC
EST: GATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGAG GGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGCEST: gi|86503583|gb|CI146216.1|CI146216
genomic: GATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGAGgtaactattc ... tggtctatagGGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGC
EST: ATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGAG GGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGCEST: gi|29658507|gb|CB654782.1|CB654782
genomic: ATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGAGgtaactattc ... tggtctatagGGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGC
EST: GATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGAG GGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGCEST: gi|86493868|gb|CI136501.1|CI136501
genomic: GATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGAGgtaactattc ... tggtctatagGGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGC
EST: GATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGAG GGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGC
genomic: GATCGGTTGCAGTTGATCCAAGCACAGGAGCACGACTAGGAAAGGGCGAGgtaactattc ... tggtctatagGGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGC
ctatctactgaaactacttattcccactcctttatttcatcaaaatggtctatagGGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGCGATTCAACCATGATAGTAACAACTG
tttatttcatcaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttctgtccaatgttggcactatgttgaaatgttgaatcatgctctatctactgaaactacttattcccactcctttatttcatcaaaatggtctatagGGATTTGCAGAGCTGGAATATGGGATGCTGCGTTATATGGGATCTATAAGCGATTCAACCATGATAGTAACAACTG
acttctg
- - - - - - tgttggc
- - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - -catgctc
- - - - - - - - - - - - - - - - - - - - - - - - -ctactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaaa