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gttgggcactttaataccccctttcctttctcaatcaattttgctgttgcctaatcagcggatctgctttatttatttaagGGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGG
species | Oryza sativa |
transcript | LOC_Os12g06800.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTATCTATCAGTTATGGTGTCTTTTAACATATTCAACAGTGAAGAAGAG GGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCCAEST: gi|58656122|gb|CK044802.1|CK044802
genomic: TTTATCTATCAGTTATGGTGTCTTTTAACATATTCAACAGTGAAGAAGAGgttgggcact ... tttatttaagGGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCCA
EST: TTTATCTATCAGTTATGGTGTCTTTTAACATATTCAACAGTGAAGAAGAG GGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCCAEST: gi|58667626|gb|CK056312.1|CK056312
genomic: TTTATCTATCAGTTATGGTGTCTTTTAACATATTCAACAGTGAAGAAGAGgttgggcact ... tttatttaagGGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCCA
EST: TTATCTATCAGTTATGGTGTCTTTTAACATATTCAACAGTGAACGAAGAG GGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCC
genomic: TTATCTATCAGTTATGGTGTCTTTTAACATATTCAACAGTGAA-GAAGAGgttgggcact ... tttatttaagGGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCC
tttctcaatcaattttgctgttgcctaatcagcggatctgctttatttatttaagGGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGG
gcctaat putative branch site (score: 22)
ctttattt putative PPT
tgctttatttatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgggcactttaataccccctttcctttctcaatcaattttgctgttgcctaatcagcggatctgctttatttatttaagGGCCCAGCAGCTTCATCTGTTATATTGAAATTTGAGCTGATATATGCCCCAACGCTGGAGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA