1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tggtaaccatcctgttgccgttcataaatttcaaaattttgtccttcatattagtgagatttgaaaaagaaaataaaattgttcatcttgttttaattagGCATCGTGCTGGACTCCGGCGACGGTGTGAGCCACACCGTGCCGATCTACGAAGGCTACGCCCTCCCGCACGCCATCCTCCGCCTCGACCTCGCCGGCCG
species | Oryza sativa |
transcript | LOC_Os12g06660.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCGCCATCCAGGCCGTGCTCTCCCTCTACGCCAGTGGCCGCACCACAG GCATCGTGCTGGACTCCGGCGACGGTGTGAGCCACACCGTGCCGATCTACG
genomic: TGTCGCCATCCAGGCCGTGCTCTCCCTCTACGCCAGTGGCCGCACCACAGgtaacgcaaa ... ttttaattagGCATCGTGCTGGACTCCGGCGACGGTGTGAGCCACACCGTGCCGATCTACG
tcatattagtgagatttgaaaaagaaaataaaattgttcatcttgttttaattagGCATCGTGCTGGACTCCGGCGACGGTGTGAGCCACACCGTGCCGATCTACGAAGGCTACGCCCTCCCGCACGCCATCCTCCGCCTCGACCTCGCCGGCCG
tcttgtttt CT-rich tract
aaaaagaaaataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtaaccatcctgttgccgttcataaatttcaaaattttgtccttcatattagtgagatttgaaaaagaaaataaaattgttcatcttgttttaattagGCATCGTGCTGGACTCCGGCGACGGTGTGAGCCACACCGTGCCGATCTACGAAGGCTACGCCCTCCCGCACGCCATCCTCCGCCTCGACCTCGCCGGCCG
- - - - - - tgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatc