Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatcaagctgcattttcgagtgcacgctcaaatcggtgaatgaatatttcctcgtgtcgacgtctcattggtcgctgagattcgttgtgacgtcatgcagATACCCCAAGGATTCGGACAAGGTCATGCTCGCCAAGCAAACCGGCCTCACCAGGAGCCAGGTACGTACGTATACGTCTACGTACAATACTACGTCTACG

Basic information

species Oryza sativa
transcript LOC_Os12g06340.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g06340.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G458728_T07 (Zea mays), 3'ss of exon 3
gatcaagctgcattttcgagtgcacgctcaaatcggtgaatgaatatttcctcgtgtcgacgtctcattggtcgctgagattcgttgtgacgtcatgcagATACCCCAAGGATTCGGACAAGGTCATGCTCGCCAAGCAAACCGGCCTCACCAGGAGCCAGGTACGTACGTATACGTCTACGTACAATACTACGTCTACG
        ||| ||   |         |||     |  |      |  || |||||||  | ||| |||||||     |  || ||||  ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||                                       
tgcttgcttgctttcgtgcccatggcgtcatgcatgcaacccctcacctcatcgtgtccgcctctaattggtccgcatggatccttgtctcgtcacgcagATACCCCAAGGATTCGGACAAGATCATGCTCGCCAAGCAAACCGGGCTCACCAGGAGTCAG---------------------------------------

upper sequence: LOC_Os12g06340.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT2G35940.2 (Arabidopsis thaliana), 3'ss of exon 3
gatcaagctgcattttcgagtgcacgctcaaatcggtgaatgaatatttcctcgtgtcgacgtctcattggtcgctgagattcgttgtgacgtcatgcagATACCCCAAGGATTCGGACAAGGTCATGCTCGCCAAGCAAACCGGCCTCACCAGGAGCCAGGTACGTACGTATACGTCTACGTACAATACTACGTCTACG
        |   |   | | |  || | ||      || |  | | |||| ||      ||      |  ||| || ||  | ||  |    | |   |||||||| |||||||||||||||  |||||| || |||||||| || |||||  | ||||||                                       
-------gtaagtaacccactatacacaca------tgcactact-tttcatcactggaacacaaactcagtctctaag--ttgtctttcttttaattagATACCCTAAGGATTCGGACAAGCACATGCTAGCTAAGCAAACAGGACTCACTCGTAGCCAG---------------------------------------