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...ctgtgtatatccccttgcagatatagaggccggatttctatccattttctaaaaaaacagataatctaagatctgtttttcttgtcgtaactcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCCGTATTTGTTATACCGAAATGCTGCACAAGAAGTAAACGGTATTTGGTT
species | Oryza sativa |
transcript | LOC_Os12g06020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|29676701|gb|CB672976.1|CB672976
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|33793549|gb|CF322657.1|CF322657
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|58686519|gb|CK075206.1|CK075206
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|29639082|gb|CB644091.1|CB644091
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|29669200|gb|CB665475.1|CB665475
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|33793116|gb|CF322439.1|CF322439
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|88433452|gb|CI594266.1|CI594266
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|58685061|gb|CK073748.1|CK073748
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|58694565|gb|CK083252.1|CK083252
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|29639128|gb|CB644137.1|CB644137
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|58660010|gb|CK048690.1|CK048690
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCEST: gi|88357134|gb|CI616021.1|CI616021
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTC
EST: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCG ATAATCTCGTGGAGGATCTATTGAG
genomic: GAACAAGCAGCCGAGGTTCCAGTTCATCGTCATGAACAGGCGTAACACCGgtatgtagtt ... ctcgtaacagATAATCTCGTGGAGGATCTATTGAG
tttctaaaaaaacagataatctaagatctgtttttcttgtcgtaactcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCCGTATTTGTTATACCGAAATGCTGCACAAGAAGTAAACGGTATTTGGTT
tcgtaac putative branch site (score: 39)
aaaaaaacagataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgtatatccccttgcagatatagaggccggatttctatccattttctaaaaaaacagataatctaagatctgtttttcttgtcgtaactcgtaacagATAATCTCGTGGAGGATCTATTGAGTGACTTTGAATTTGAACTTCAGCCTCCGTATTTGTTATACCGAAATGCTGCACAAGAAGTAAACGGTATTTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa