1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atatcttactgtcatagaagcttctgtccatgtttatttaagttcattgtgcaaaccttgtgaatgcaacttgattacccagtgtttacttgttgtatagATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTTTGGTGCCAAAGCCAGGCCGGCCAGCCATTCTTCTACTG
species | Oryza sativa |
transcript | LOC_Os12g05420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCT ATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTTEST: gi|88409692|gb|CI568982.1|CI568982
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTT
EST: CCAGAGACGGGAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCT ATTGACCCACGGCATEST: gi|88353149|gb|CI624113.1|CI624113
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGCAT
EST: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCAGTGGATCGAGGCT ATTGACCCACGGCCATAGATATEST: gi|88761736|gb|CI771292.1|CI771292
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGC-ATAGATAT
EST: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCT ATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGEST: gi|88385913|gb|CI568581.1|CI568581
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATG
EST: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCT ATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTTEST: gi|29688635|gb|CB684910.1|CB684910
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTT
EST: CCACAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCCAGGCT ATTGACCCACGGCATATATATGGTCACAATCTGCATTTCTACTATGATGTTEST: gi|58604460|gb|CK014988.1|CK014988
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTT
EST: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCT ATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTTEST: gi|88826469|gb|CI777034.1|CI777034
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTT
EST: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCT ATTGACCCACGGCATEST: gi|58677266|gb|CK065953.1|CK065953
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGCAT
EST: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCT ATTGACCCACGGCATAGATATGGTCEST: gi|117240969|gb|CT842912.1|CT842912
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGCATAGATATGGTC
EST: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCT ATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTTEST: gi|33797243|gb|CF324484.1|CF324484
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTT
EST: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCT ATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTT
genomic: CCAGAGACGGCAAGGCTCTGAAGCTGGCATTCCAGCACTGGATCGAGGCTgtgagtacaa ... tgttgtatagATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTT
attgtgcaaaccttgtgaatgcaacttgattacccagtgtttacttgttgtatagATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTTTGGTGCCAAAGCCAGGCCGGCCAGCCATTCTTCTACTG
acttgat putative branch site (score: 23)
tttactt putative PPT
ttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcttactgtcatagaagcttctgtccatgtttatttaagttcattgtgcaaaccttgtgaatgcaacttgattacccagtgtttacttgttgtatagATTGACCCACGGCATAGATATGGTCACAATCTGCATTTCTACTATGATGTTTGGTGCCAAAGCCAGGCCGGCCAGCCATTCTTCTACTG
- - cttactg
- - - - - - - - - -gcttctg
- - - - - - - - - - - - - tccatgt
- - - - - - - - - - - - - - - - - - - - - - -attgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgc