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...ggagcataaactggatgggatgcaaaataatatgccctttcatggaagctatattgacatgtagggcttagtataaccagcttatgagttttatgcacagGTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCATAATTGGAGATGACTCTTCCATATTTGTGGCGACTGATCGAACGTCATG
species | Oryza sativa |
transcript | LOC_Os12g03470.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAG GTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCAEST: gi|29624170|gb|CB629181.1|CB629181
genomic: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAGgtacttcaat ... ttatgcacagGTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCA
EST: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAG GTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCAEST: gi|29624168|gb|CB629179.1|CB629179
genomic: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAGgtacttcaat ... ttatgcacagGTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCA
EST: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAG GTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCAEST: gi|29627193|gb|CB632204.1|CB632204
genomic: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAGgtacttcaat ... ttatgcacagGTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCA
EST: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAG GTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCAEST: gi|88327708|gb|CI657748.1|CI657748
genomic: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAGgtacttcaat ... ttatgcacagGTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCA
EST: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAG GTTTTGAAGCTGGAGGCCCTCATACCCCEST: gi|29667031|gb|CB663306.1|CB663306
genomic: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAGgtacttcaat ... ttatgcacagGTTTTGAAGCTGGAGGCCCTCATACCCC
EST: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAG GTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCA
genomic: CAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAACAGAGgtacttcaat ... ttatgcacagGTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCA
aagctatattgacatgtagggcttagtataaccagcttatgagttttatgcacagGTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCATAATTGGAGATGACTCTTCCATATTTGTGGCGACTGATCGAACGTCATG
ttagtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagcataaactggatgggatgcaaaataatatgccctttcatggaagctatattgacatgtagggcttagtataaccagcttatgagttttatgcacagGTTTTGAAGCTGGAGGCCCTCATACCCCATCAAACATTGATCCATGGTCCATAATTGGAGATGACTCTTCCATATTTGTGGCGACTGATCGAACGTCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG