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gtctgtgatccttctccctaagcagaatacattgccggttaagttttttaaaattttctatgggatagaaaccagtggggaaaaagatggaatctttgatatgctgtatgattgttgattagttctttgtttttttaaaaaaaaggagtattaatatcttcttcggttcttatcttacaatcctttttgcagGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACC
species | Oryza sativa |
transcript | LOC_Os12g03190.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTG GTCTTGTACTACTTGATTGTTCTGCAACTTATGATACTGTTGGGATGCTEST: gi|88851700|gb|CI674902.1|CI674902
genomic: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGgtctgtgatc ... ctttttgcagGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCT
EST: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTG GTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGEST: gi|88362042|gb|CI607042.1|CI607042
genomic: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGgtctgtgatc ... ctttttgcagGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATG
EST: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTG GTCTTGTACTAGTTGATTGTTCTGGAACTTATGATACTGTTGGCATGCTAAEST: gi|702505|gb|D48796.1|D48796
genomic: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGgtctgtgatc ... ctttttgcagGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAA
EST: AAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTG GTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAEST: gi|2310428|gb|C26583.1|C26583
genomic: AAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGgtctgtgatc ... ctttttgcagGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAA
EST: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTG GTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGNATGCTAAEST: gi|88306132|gb|CI636510.1|CI636510
genomic: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGgtctgtgatc ... ctttttgcagGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAA
EST: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTG GTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAEST: gi|88333928|gb|CI645342.1|CI645342
genomic: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGgtctgtgatc ... ctttttgcagGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAA
EST: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTG GTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAA
genomic: GGCTAGGAGGAAAGTCATTGACACTGCCAGCGTTCTTGGGAAAACAACTGgtctgtgatc ... ctttttgcagGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAA
aaaaaaaggagtattaatatcttcttcggttcttatcttacaatcctttttgcagGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACC
tcctttttgc CT-rich tract
tattaatatcttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtgatccttctccctaagcagaatacattgccggttaagttttttaaaattttctatgggatagaaaccagtggggaaaaagatggaatctttgatatgctgtatgattgttgattagttctttgtttttttaaaaaaaaggagtattaatatcttcttcggttcttatcttacaatcctttttgcagGTCTTGTACTAGTTGATTGTTCTGCAACTTATGATACTGTTGGCATGCTAAAGGATGCCGTGGATCGTGGATGTTGTGTTGTATTGGCAAACAAGAAACC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA