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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgtgttatatggtcttgcagaaatgcactctttttttatgtttgagggaaatggtgatttgcatttgtgagtgacatgttcttatcttccccatttagGTACTTGATGATCCGAAGATGTCGTCAAACTCCACTCTAACAGACTCTCTTCATGAGAGAACAATTGTTTTTGGCCTGAAACTTTGGGTTGTAATTGGGA

Basic information

species Oryza sativa
transcript LOC_Os12g01740.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88406842|gb|CI578370.1|CI578370
EST:     TCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCATTGTATCCAATAAAG                         GTACTTGATGATCCGAAGATGTCGTCAAACTCCACTCTAACAGACTCTCTT
genomic: TCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCATTGTATCCAATAAAGgttggttact ... ccccatttagGTACTTGATGATCCGAAGATGTCGTCAAACTCCACTCTAACAGACTCTCTT
EST: gi|117216841|gb|CT845228.1|CT845228
EST:     TCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCATTGTATCCAATAAAG                         GTACTTGATGATCCGAAGATGTCGTCAAACTCCACTCTAACAGACTCTCTT
genomic: TCACTTCTTGAAGGCCAATTTCTGGTTCCTCACCATTGTATCCAATAAAGgttggttact ... ccccatttagGTACTTGATGATCCGAAGATGTCGTCAAACTCCACTCTAACAGACTCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagggaaatggtgatttgcatttgtgagtgacatgttcttatcttccccatttagGTACTTGATGATCCGAAGATGTCGTCAAACTCCACTCTAACAGACTCTCTTCATGAGAGAACAATTGTTTTTGGCCTGAAACTTTGGGTTGTAATTGGGA
                                   ttcttatcttccccat  CT-rich tract
                                   ttcttat  TA-rich tract