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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctacgtaaccttggaattattctaaacaatctttattacagatctagcaagttcttaatactcttgcttcaacataagttctctatacaacctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTG

Basic information

species Oryza sativa
transcript LOC_Os12g01580.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|570085|gb|D40934.1|D40934
EST:     CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTC                         GATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
genomic: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaagc ... acctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
EST: gi|29639600|gb|CB644609.1|CB644609
EST:     CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTC                         GATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
genomic: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaagc ... acctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
EST: gi|117243617|gb|CT843150.1|CT843150
EST:     CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTC                         GATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTTAGGGCATAT
genomic: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaagc ... acctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcaagttcttaatactcttgcttcaacataagttctctatacaacctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTG
        tcttaat  putative branch site (score: 3)
       ttcttaata  TA-rich tract