1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gctacgtaaccttggaattattctaaacaatctttattacagatctagcaagttcttaatactcttgcttcaacataagttctctatacaacctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTG
species | Oryza sativa |
transcript | LOC_Os12g01580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTC GATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATEST: gi|29639600|gb|CB644609.1|CB644609
genomic: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaagc ... acctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
EST: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTC GATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATEST: gi|117243617|gb|CT843150.1|CT843150
genomic: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaagc ... acctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
EST: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTC GATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTTAGGGCATAT
genomic: CACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCgtacgtaagc ... acctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATAT
tagcaagttcttaatactcttgcttcaacataagttctctatacaacctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTG
tcttaat putative branch site (score: 3)
ttcttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctacgtaaccttggaattattctaaacaatctttattacagatctagcaagttcttaatactcttgcttcaacataagttctctatacaacctacacagGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTG
- - - - - - - - - - - - -aacaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacataag