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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattccgaatcatttcccctcctaacagtgtttttcccgtaatcaccgtattgttcttacttacctttaacattctgcacaagAAACAAGAGGTTCGAGCTCTTCCAAAAATTTAGATCGGGACAGAAATGGAGCCATGGGCCATTAGAGTGGCCTACTTCATAGTGTTCTCCTTTCTTGTCA

Basic information

species Oryza sativa
transcript LOC_Os12g01510.4
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117240478|gb|CT842829.1|CT842829
EST:     TGAGCTTTCTGGACAAACTAGCTGTCTAGCCCCATCTCCACACTCCATAG                         AAACAAGAGGTTCGAGCTCTTCCAAAAATTTAGATCGGGACAGAAATGGAG
genomic: TGAGCTTTCTGGACAAACTAGCTGTCTAGCCCCATCTCCACACTCCATAGgtaaaattcc ... tctgcacaagAAACAAGAGGTTCGAGCTCTTCCAAAAATTTAGATCGGGACAGAAATGGAG
EST: gi|33799551|gb|CF325636.1|CF325636
EST:     TGAGCTTTCTGGACAAACTAGCTGTCTAGCCCCATCTCCACACTCCATAG                         AAACAAGAGGTTCGAGCTCTTCCAAAAATTTAGATCGGGACAGAAATGGAG
genomic: TGAGCTTTCTGGACAAACTAGCTGTCTAGCCCCATCTCCACACTCCATAGgtaaaattcc ... tctgcacaagAAACAAGAGGTTCGAGCTCTTCCAAAAATTTAGATCGGGACAGAAATGGAG
EST: gi|29623656|gb|CB628667.1|CB628667
EST:     TGAGCTTTCTGGACAAACTAGCTGTCTAGCCCCATCTCCACACTCCATAG                         AAACAAGAGGTTCGAGCTCTTCCAAAAATTTAGATCGGGACAGAAATGGAG
genomic: TGAGCTTTCTGGACAAACTAGCTGTCTAGCCCCATCTCCACACTCCATAGgtaaaattcc ... tctgcacaagAAACAAGAGGTTCGAGCTCTTCCAAAAATTTAGATCGGGACAGAAATGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttcccgtaatcaccgtattgttcttacttacctttaacattctgcacaagAAACAAGAGGTTCGAGCTCTTCCAAAAATTTAGATCGGGACAGAAATGGAGCCATGGGCCATTAGAGTGGCCTACTTCATAGTGTTCTCCTTTCTTGTCA
                                     tttaacatt  TA-rich tract