1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgacattttcctttcttaacacttggcatataatacaatccacaccattcctttgaattatgagctcttacttgatgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG
species | Oryza sativa |
transcript | LOC_Os12g01430.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|33822729|gb|CF337172.1|CF337172
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTNTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|33686639|gb|CF314878.1|CF314878
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|163918505|gb|EG711435.1|EG711435
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|55440809|gb|CV733716.1|CV733716
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCATCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|88347469|gb|CI637409.1|CI637409
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCEST: gi|218490970|gb|FG950243.1|FG950243
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTC
EST: GGCGTTCACCTGCTGATGAATCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAEST: gi|163925538|gb|EG713379.1|EG713379
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTA
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|88302253|gb|CI668099.1|CI668099
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|88302497|gb|CI668343.1|CI668343
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|88294157|gb|CI667131.1|CI667131
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATEST: gi|218498120|gb|FG965520.1|FG965520
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
EST: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAG TTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
genomic: GGCGTTCACCTGCTGATGAAGCTAAAACAGGCCTTCATAAACTTTCCAAGgtgacatttt ... ctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGAT
cacaccattcctttgaattatgagctcttacttgatgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG
tgttttct CT-rich tract
tttgaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacattttcctttcttaacacttggcatataatacaatccacaccattcctttgaattatgagctcttacttgatgtatgttttctgtatttagTTCCTACAAGGTGATACTGGACTGTTCTTTACTAATCTTCCAAGAGATGATGTAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG