1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactctaccaactctgctttgcttcccattcccaactagtactcactccgttatatgctgcttcttctcatctcagGTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGCTTCAGGCGGAGGGCAAGCTGGCGCCCGGCGCCCCGCGCCGATATGCTGG
species | Oryza sativa |
transcript | LOC_Os11g48040.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTG GTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGCEST: gi|117251481|gb|CT844185.1|CT844185
genomic: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTGgtactctacc ... ctcatctcagGTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGC
EST: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTG GTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGCEST: gi|29643037|gb|CB648044.1|CB648044
genomic: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTGgtactctacc ... ctcatctcagGTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGC
EST: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTG GTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGCEST: gi|88573786|gb|CI665555.1|CI665555
genomic: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTGgtactctacc ... ctcatctcagGTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGC
EST: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTG GTGCCATTGCGATCAGTATCGCEST: gi|58661525|gb|CK050205.1|CK050205
genomic: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTGgtactctacc ... ctcatctcagGTGCCATTGCGATCAGTATCGC
EST: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTG GTGCCATTGCGATCAGTATCGCCAACCCCAEST: gi|58594298|gb|CF992606.1|CF992606
genomic: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTGgtactctacc ... ctcatctcagGTGCCATTGCGATCAGTATCGCCAACCCCA
EST: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTG GTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGC
genomic: TGTCGGGGATGTGCCTCTCACCAAGAAGATCGCTGCCGGCTTCACCACTGgtactctacc ... ctcatctcagGTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGC
cttcccattcccaactagtactcactccgttatatgctgcttcttctcatctcagGTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGCTTCAGGCGGAGGGCAAGCTGGCGCCCGGCGCCCCGCGCCGATATGCTGG
tactcac putative branch site (score: 29)
ctgcttcttctcatct putative PPT
ttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctaccaactctgctttgcttcccattcccaactagtactcactccgttatatgctgcttcttctcatctcagGTGCCATTGCGATCAGTATCGCCAACCCCACTGACCTTGTCAAGGTTAGGCTTCAGGCGGAGGGCAAGCTGGCGCCCGGCGCCCCGCGCCGATATGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG