1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttgattgaaaaaaaaaactgacatcaaatctgttgttagcaccatgaacaatttatctgcctaagattttgtactaattcttacattatatctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCCACCTTGGCTGTATTTATGAGTGGATGGAAAGAAGTGAAGCATGCCCTGT
species | Oryza sativa |
transcript | LOC_Os11g41140.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAG ATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCCEST: gi|86853241|gb|CI326336.1|CI326336
genomic: CTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGgtattaatct ... atctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCC
EST: CTGAA-ATGAAGATGTCTGCCCAAC-TGTCTTGAAG ATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCCEST: gi|58680197|gb|CK068884.1|CK068884
genomic: CTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGgtattaatct ... atctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCC
EST: CTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAG ATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCCEST: gi|89189274|gb|CI048813.1|CI048813
genomic: CTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGgtattaatct ... atctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCC
EST: CCCATCCGCTGAAGATGAAGATGTCTGCCCCACTTGTCTTGAAG ATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCCEST: gi|218485315|gb|FG946188.1|FG946188
genomic: CCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGgtattaatct ... atctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCC
EST: CTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCNACTTGTCTTGAAG ATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCCEST: gi|117249243|gb|CT855216.1|CT855216
genomic: CTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGgtattaatct ... atctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCC
EST: CTTT-CCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAG ATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTC-EST: gi|88830315|gb|CI076571.1|CI076571
genomic: CTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGgtattaatct ... atctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCC
EST: CCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAG ATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCCEST: gi|58602974|gb|CK013502.1|CK013502
genomic: CCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGgtattaatct ... atctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCC
EST: CTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAG ATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCC
genomic: CTTTTCCCCATCCGCTGAAGATGAAGATGTCTGCCCAACTTGTCTTGAAGgtattaatct ... atctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCC
tgaacaatttatctgcctaagattttgtactaattcttacattatatctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCCACCTTGGCTGTATTTATGAGTGGATGGAAAGAAGTGAAGCATGCCCTGT
taattcttacattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgattgaaaaaaaaaactgacatcaaatctgttgttagcaccatgaacaatttatctgcctaagattttgtactaattcttacattatatctatgcagATTATACTTCTGAGAATCCTAGGATAGTAATGCAGTGCTCACATCATTTCCACCTTGGCTGTATTTATGAGTGGATGGAAAGAAGTGAAGCATGCCCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
-ttgattg
- - - - aaaaaaa
- - - - - - - - - - - catcaaa
- - - - - - - - - - - - - - - ctgttgt
- - - - - - - - - - - - - - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttacat