1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cagcagatttaatgtaattaacttcttaggtttggctgagccgtacactttttatatacatgtgcttatatgatttccttttttgtattaaatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT
species | Oryza sativa |
transcript | LOC_Os11g40510.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAG TCATCCTTGGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAEST: gi|58688359|gb|CK077046.1|CK077046
genomic: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
EST: AGCTCATCAGGAAGGAAAAG TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAEST: gi|86897973|gb|CI290697.1|CI290697
genomic: AGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
EST: ATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAG TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAEST: gi|87012285|gb|CI293335.1|CI293335
genomic: ATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
EST: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAG TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAEST: gi|58602505|gb|CK013033.1|CK013033
genomic: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
EST: AGGATGCAAGCTCATCAGGAAGGAAAAG TCATCC-TTGG-TTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAEST: gi|58681227|gb|CK069914.1|CK069914
genomic: AGGATGCAAGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
EST: TCCAAAGTA-TGGTCCAGTA-AAGGATGCAAGCTCATCAGGAAGGAAAAG TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAEST: gi|58678674|gb|CK067361.1|CK067361
genomic: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
EST: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAG TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAEST: gi|58690866|gb|CK079553.1|CK079553
genomic: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
EST: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAG TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAEST: gi|87022688|gb|CI293578.1|CI293578
genomic: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
EST: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAG TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAEST: gi|58694246|gb|CK082933.1|CK082933
genomic: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
EST: AGCTCATCAGGAAGGAAAAG TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAEST: gi|25797088|gb|CA753049.1|CA753049
genomic: AGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
EST: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAG TCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
genomic: TCCAAAGTATTGGTCCAGTAGAAGGATGCAAGCTCATCAGGAAGGAAAAGgtgtggaatc ... aatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCA
cactttttatatacatgtgcttatatgatttccttttttgtattaaatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT
ttatatgatttccttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcagatttaatgtaattaacttcttaggtttggctgagccgtacactttttatatacatgtgcttatatgatttccttttttgtattaaatctcgcagTCATCCTTTGGTTTTGTTGACTATTATGACCGTAGATCTGCTGCAATTGCAATTGTATCACTCAACGGTAGACAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC