1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcctttttggcacattttgcctgtagatccatgtcgattaacagatattggcaatgtattccatctccattctgacaaattgaactgtccttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTCAAGATGCCATGTAATAAGGTTGGCCTTCGTCTGGATGAGAATGCAAAA
species | Oryza sativa |
transcript | LOC_Os11g38900.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|87038208|gb|CI192830.1|CI192830
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|218493534|gb|FG958321.1|FG958321
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGCTGCATTCAGTGTTTEST: gi|58678636|gb|CK067323.1|CK067323
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACATAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|86482418|gb|CI125051.1|CI125051
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|58677534|gb|CK066221.1|CK066221
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|87040861|gb|CI195483.1|CI195483
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|86479324|gb|CI121957.1|CI121957
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AATGCGAACCCGTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|29622757|gb|CB627768.1|CB627768
genomic: AATGCGAACCC-TGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|87038570|gb|CI193192.1|CI193192
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|88236205|gb|CI235407.1|CI235407
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACTAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|88198118|gb|CI197968.1|CI197968
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|86477847|gb|CI120480.1|CI120480
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|89176010|gb|CI043031.1|CI043031
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|86518191|gb|CI158397.1|CI158397
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|86540420|gb|CI180626.1|CI180626
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|86513659|gb|CI156292.1|CI156292
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|29638593|gb|CB643602.1|CB643602
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTEST: gi|86435681|gb|CI106914.1|CI106914
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
EST: AAATGCGAACCCTGCAACGAATACATTAAAGCATAATCTGCCATTGCAAG AAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
genomic: AAATGCGAACCCTGCAACAAAAACATTAAAGCATAATCTGCCATTGCAAGgtgagtcatt ... ttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTT
tattggcaatgtattccatctccattctgacaaattgaactgtccttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTCAAGATGCCATGTAATAAGGTTGGCCTTCGTCTGGATGAGAATGCAAAA
tccttac putative branch site (score: 32)
tccttacct CT-rich tract
aatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctttttggcacattttgcctgtagatccatgtcgattaacagatattggcaatgtattccatctccattctgacaaattgaactgtccttacctacagAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTCAAGATGCCATGTAATAAGGTTGGCCTTCGTCTGGATGAGAATGCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - -gcacatt
- - - - - - - - ttgcctg
- - - - - - - - - - - - - atccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaactg