1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcgtagaatacctgtagcttctttcagtcttctgtagattttccaatgtgtttccgttcctgtgtattaatttcgttgaggcttgtattttcttctgcagCAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCAGACGATACCATCATAGATATCGG
species | Oryza sativa |
transcript | LOC_Os11g38800.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAG CAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCAGACGATACCEST: gi|86906408|gb|CI294531.1|CI294531
genomic: TGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAGgtcagtaaga ... tcttctgcagCAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCAGACGATACC
EST: AACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAG CAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCAGACGATACCEST: gi|428583|gb|D24735.1|D24735
genomic: AACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAGgtcagtaaga ... tcttctgcagCAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCAGACGATACC
EST: AACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAG CAATATAAGCATGGATACACAGCTCCAEST: gi|300215663|gb|HO088289.1|HO088289
genomic: AACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAGgtcagtaaga ... tcttctgcagCAATATAAGCATGGATACACAGCTCCA
EST: CACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAG CAATATAAGCATGGATACACAGCTCCACCTCGTGGTTGAACCAGACGATACEST: gi|300216176|gb|HO087961.1|HO087961
genomic: AACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAGgtcagtaaga ... tcttctgcagCAATATAAGCATGGATACACAGCTCCACCTCGT-GTTGAACCAGACGATAC
EST: AACGCTGGTGCAATGAGAAAGGAGGCATTACATGTGAAATCTGTCATGAG CAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCAGACGATACC
genomic: AACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCTGTCATGAGgtcagtaaga ... tcttctgcagCAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCAGACGATACC
atgtgtttccgttcctgtgtattaatttcgttgaggcttgtattttcttctgcagCAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCAGACGATACCATCATAGATATCGG
tattaat putative branch site (score: 25)
cttgtattttcttct putative PPT
tgtattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtagaatacctgtagcttctttcagtcttctgtagattttccaatgtgtttccgttcctgtgtattaatttcgttgaggcttgtattttcttctgcagCAATATAAGCATGGATACACAGCTCCACCTCGTGTTGAACCAGACGATACCATCATAGATATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC