1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggaactgttttcaaagcgcaccattagttgtttgtcttattatgtgtattattattcactacttttatttcatcacatgcttctttcaatggctgccagGTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTAGGGCAATAGATTATGAGATCTCCCGGCAGATTCTTCTTCATAAAGAAGGTCAGGCTGATC
species | Oryza sativa |
transcript | LOC_Os11g34210.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGTGAATGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAG GTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTAGGGCAATAGATEST: gi|38469413|gb|CF953544.1|CF953544
genomic: ATGTGAATGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAGgtaatcatga ... tggctgccagGTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTAGGGCAATAGAT
EST: ATGTGAATGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAG GTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTAGGGCAATAGAT
genomic: ATGTGAATGTTTCTGTTCGGCCAATTGGACAATCAAATTTTGGTACAAAGgtaatcatga ... tggctgccagGTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTAGGGCAATAGAT
tgtattattattcactacttttatttcatcacatgcttctttcaatggctgccagGTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTAGGGCAATAGATTATGAGATCTCCCGGCAGATTCTTCTTCATAAAGAAGGTCAGGCTGATC
tattattcactacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaactgttttcaaagcgcaccattagttgtttgtcttattatgtgtattattattcactacttttatttcatcacatgcttctttcaatggctgccagGTTGAAATAAAGAATATGAATTCATTTTCTGCAATAAGTAGGGCAATAGATTATGAGATCTCCCGGCAGATTCTTCTTCATAAAGAAGGTCAGGCTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - gcaccat
- - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttct