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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaaagtttcaagcacatcattcagatatgtaaaagattcaggagtagcatagaacagagtaaccaatcagctgacaaagttgtgctgaaattaattcagGGGACACCACTGGGAGAATGGATCTTCAAGAGCAAGAGCAAGCAGAACAGCTGTGGCCTGCAAGGGGCCTGCAAGGGCTACATGTTTGCTCTCCAGGTGA

Basic information

species Oryza sativa
transcript LOC_Os11g32750.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g32750.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G057963_T02 (Zea mays), 3'ss of exon 4
-tcaaagtttcaagcacatcattcagatatgtaaaagattcaggagtagcatagaacagagtaaccaatcagctgacaaagttgtgctgaaattaattcagGGGACACCACTGGGAGAATGGATCTTCAAGAGCAAGAGCAAGCAGAACAGCTGTGGCCTGCAAGGGGCCTGCAAGGGCTACATGTTTGCTCTCCAGGTGA
   | |     |   | ||  || |||    ||       |     || |     |   |  |  |    | | |   ||  ||  |||   || ||||||| |||||| ||||| ||||||||||||||||||||||||||||| || || || || ||||||||||| |||||||||| |||||| |  || ||||| |
tatatatcaatatttatatttttgagaagcctagggataactcccttatcccgctatttaaaacactgctaacagctgaatatg-actgcttttcattcagGCGACACCGCTGGGTGAATGGATCTTCAAGAGCAAGAGCAAGCAAAATAGTTGCGGTCTGCAAGGGGCATGCAAGGGCTTCATGTTCGGACTACAGGTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38472666|gb|CF956798.1|CF956798
EST:     CTGCCTGCAGAGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCGTTCTAAGT                         GGGACACCACTGGGAGAATGGATCTTCAAGAGCAAGAGCAAGCAGAACAGC
genomic: CTGCCTGCAGAGAGGCCTTCGAGGAAGCAGGCGTCAAGGGCGTTCTAAGTgtaggtgacc ... attaattcagGGGACACCACTGGGAGAATGGATCTTCAAGAGCAAGAGCAAGCAGAACAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcatagaacagagtaaccaatcagctgacaaagttgtgctgaaattaattcagGGGACACCACTGGGAGAATGGATCTTCAAGAGCAAGAGCAAGCAGAACAGCTGTGGCCTGCAAGGGGCCTGCAAGGGCTACATGTTTGCTCTCCAGGTGA
                                         tgaaattaatt  TA-rich tract