1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcacctacattcgtcaaatatcctgcattccaaacaagcccttgattcatggtgaatgatttaattaagttaacaaaaaactttgttgatcaatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGA
species | Oryza sativa |
transcript | LOC_Os11g32500.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGG GCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTEST: gi|38477358|gb|CF961491.1|CF961491
genomic: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGgtaatcagaa ... caatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTT
EST: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGG GCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTEST: gi|86599734|gb|CI253719.1|CI253719
genomic: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGgtaatcagaa ... caatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTT
EST: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGG GCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTEST: gi|15854402|gb|BI807198.1|BI807198
genomic: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGgtaatcagaa ... caatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTT
EST: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGG GCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTEST: gi|88987923|gb|CI017986.1|CI017986
genomic: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGgtaatcagaa ... caatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTT
EST: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGG GCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTEST: gi|87016907|gb|CI284241.1|CI284241
genomic: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGgtaatcagaa ... caatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTT
EST: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGACGG GCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTEST: gi|86261567|gb|CI017309.1|CI017309
genomic: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGgtaatcagaa ... caatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTT
EST: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGG GCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTEST: gi|38480409|gb|CF964498.1|CF964498
genomic: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGgtaatcagaa ... caatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTT
EST: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGG GCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTT
genomic: GATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGgtaatcagaa ... caatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTT
ttcatggtgaatgatttaattaagttaacaaaaaactttgttgatcaatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGA
aatgatttaattaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacctacattcgtcaaatatcctgcattccaaacaagcccttgattcatggtgaatgatttaattaagttaacaaaaaactttgttgatcaatttgcagGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-cacctac
- - - - - - - - - - - -tgcattc
- - - - - - - - - - - - - - - - - caagccc
- - - - - - - - - - - - - - - - - - - - - tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa