1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaatttcttcacatctttgtcttaacagttaatttccttaccaaaactaaatgtaaaaaccaacgcatgctgacatagttttacttgttaatgatgctagGTTTGATGGTACAACAGATGCAGTTGGGATCCAATTCTTTCTGAAGAATGTTCATGCTAGAATGAAAACAGCTGCTTCGTCACTCTTTGGATCCCCTGGC
species | Oryza sativa |
transcript | LOC_Os11g31110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTAATGTACTTTGCAGTGACTGGAATAGCTGGAAAGATCCAATCATCTG GTTTGATGGTACAACAGATGCAGTTGGGATCCAATTCTTTCTGAAGAATGTEST: gi|58691702|gb|CK080389.1|CK080389
genomic: ACTAATGTACTTTGCAGTGACTGGAATAGCTGGAAAGATCCAATCATCTGgttagtacta ... atgatgctagGTTTGATGGTACAACAGATGCAGTTGGGATCCAATTCTTTCTGAAGAATGT
EST: ACTAATGTACTTTGCAGTGACTGGAATAGCTGGAAAGATCCAATCATCTG GTTTGATGGTACAACAGATGCAGTTGGGATCCAATTCTTTCTGAAGAATGT
genomic: ACTAATGTACTTTGCAGTGACTGGAATAGCTGGAAAGATCCAATCATCTGgttagtacta ... atgatgctagGTTTGATGGTACAACAGATGCAGTTGGGATCCAATTCTTTCTGAAGAATGT
actaaatgtaaaaaccaacgcatgctgacatagttttacttgttaatgatgctagGTTTGATGGTACAACAGATGCAGTTGGGATCCAATTCTTTCTGAAGAATGTTCATGCTAGAATGAAAACAGCTGCTTCGTCACTCTTTGGATCCCCTGGC
ttttacttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatttcttcacatctttgtcttaacagttaatttccttaccaaaactaaatgtaaaaaccaacgcatgctgacatagttttacttgttaatgatgctagGTTTGATGGTACAACAGATGCAGTTGGGATCCAATTCTTTCTGAAGAATGTTCATGCTAGAATGAAAACAGCTGCTTCGTCACTCTTTGGATCCCCTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - cttcaca
- - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcatgc