1 5' 3' | 2 5' 3' | 3 5' 3' |
...tattttgctgtctgtacatgtgcaaagaacttaatttgtgccataaaaatcctgcttgctgtgctctcctagaattctaacttgaaatttctttatgtagCTTTTGGACGAGGAAAGATGGTATAATTTTGATGATAGCCATGTTTCTGCCATCAATGAAGAAGATGTAAAATCAGGTGCAGCCTATGTGCTCTTTTACA
species | Oryza sativa |
transcript | LOC_Os11g28365.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAATCATTATGGCAGCATGGCAAGTGGACATTATACAGCATACATAAAG CTTTTGGACGAGGAAAGATGGTATAATTTTGATGATAGCCATGTTTCTGCC
genomic: GCAATCATTATGGCAGCATGGCAAGTGGACATTATACAGCATACATAAAGgttcatccta ... ctttatgtagCTTTTGGACGAGGAAAGATGGTATAATTTTGATGATAGCCATGTTTCTGCC
aaaatcctgcttgctgtgctctcctagaattctaacttgaaatttctttatgtagCTTTTGGACGAGGAAAGATGGTATAATTTTGATGATAGCCATGTTTCTGCCATCAATGAAGAAGATGTAAAATCAGGTGCAGCCTATGTGCTCTTTTACA
ttctaac putative branch site (score: 20)
tttctttat putative PPT
ttgaaatttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttgctgtctgtacatgtgcaaagaacttaatttgtgccataaaaatcctgcttgctgtgctctcctagaattctaacttgaaatttctttatgtagCTTTTGGACGAGGAAAGATGGTATAATTTTGATGATAGCCATGTTTCTGCCATCAATGAAGAAGATGTAAAATCAGGTGCAGCCTATGTGCTCTTTTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - -tgctgtc
- - - - - - -gtacatg
- - - - - - - - - - - -aaagaac
- - - - - - - - - - - - - - - - - - - tgccata
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgc