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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgcttggaatgagctaggaggggttggagtttgggttccatatgtagttgcttggtgcttgggggttagttagggtggctatgaagttttgatgatgagaggggtattgatgtttgggttgcattcatggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG

Basic information

species Oryza sativa
transcript LOC_Os11g28300.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g28300.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G151863_T01 (Zea mays), 3'ss of exon 3
gtacttgct--tggaatgagctaggaggggttggagtttgggttccatatgtagttgcttggtgcttgggggttagttagggtggctatgaagttttgatgatgagaggggtatt---gatgtttgggttgcattcatgg-tgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG
|||||   |  ||   ||||||||||||  |||   || ||        | |   | | || ||       |    ||    ||||| |||  ||| ||||    |  |  | ||   | ||||    ||   ||| | | ||||||||||||||||||| || || || ||||| ||||| ||||| |||||||||||||||||||| ||  |||||||||| ||||| ||||| || |||||||| 
gtactgattagtgatgtgagctaggaggatttgagtttcggaaatggcctctgtgtacctgctgtcctactgc--attgccttggctgtgagatttggatgtgtggctgtttcttcgagctgttcaattttttttctttgctgatgtagATTGGAGATGAGACATTCATCATTGCTGCGCTGATGGCGATGCGGCACCCCAAGTCAATTGTGTTGTCTGGTGCACTATCTGCGCTTTATGTGATGACA

upper sequence: LOC_Os11g28300.2 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv04s0023g00380.t01 (Vitis vinifera), 3'ss of exon 3
gtacttgcttggaatgagctaggaggggttggagtttgggttccatatgtagttgcttggtgcttgggggttagttagggtggctatgaagttttgatgatgagaggggtattgatgtttgggttgcattcatggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG
                            ||  |||   |  || |  |||   ||  |||| || |   |||    ||  | | ||| |  |     ||||||  |   |||||||  | | |||               ||||||||||||||||| ||||| || || || || ||||||||| | ||||| || ||||| ||| | |||||||||||    ||  |    || ||||||
-------------------------ttattatagtg-agcctcaaactgttactg--tggtact-gtatgtttaccagttttgttat-atttgcatctgatgaatgttttattgataatggtgttat-------------tagATTGGAGATGAAACATTTATAATAGCAGCTCTTATGGCAATGAGACACCCTAAATCAATTGTTTTATCTGGTGCGCTCAGTGCTTTGATTGTAATGACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttttgatgatgagaggggtattgatgtttgggttgcattcatggtgatgtagATTGGAGATGAAACCTTTATTATTGCGGCGCTAATGGCAATGCGGCACCCCAAGTCAATCGTTCTGTCTGGTGCGCTATCGGCGCTCTACGTGATGACG
                     tattgat  putative branch site (score: 3)
                     tattgat  TA-rich tract