1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcaacatgctgtttttctcatgacagcagcatataaacatagatgattcatgtgattgatttcattggagctttgggctaacatgtgatattttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTGGGGCTAAATGTTTATATGCATACTCCATTCGCCTGTCAGTTCCAGAGG
species | Oryza sativa |
transcript | LOC_Os11g16390.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|29677579|gb|CB673854.1|CB673854
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|29658842|gb|CB655117.1|CB655117
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|29645119|gb|CB650126.1|CB650126
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|29664980|gb|CB661255.1|CB661255
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
gattcatgtgattgatttcattggagctttgggctaacatgtgatattttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTGGGGCTAAATGTTTATATGCATACTCCATTCGCCTGTCAGTTCCAGAGG
ggctaac putative branch site (score: 20)
tattttttc putative PPT
atgtgatatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaacatgctgtttttctcatgacagcagcatataaacatagatgattcatgtgattgatttcattggagctttgggctaacatgtgatattttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTGGGGCTAAATGTTTATATGCATACTCCATTCGCCTGTCAGTTCCAGAGG
- - - -tgctgtt
- - - - - - - - - - - - cagcagc
- - - - - - - - - - - - - - - - -ataaaca
- - - - - - - - - - - - - - - - - - - - - - tgattca
- - - - - - - - - - - - - - - - - - - - - - - - -catgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - gtgattg