1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...accttcgaaaatttaagacaagttcccaacccccacaccaccaccaaaggcggtcctcactggttcgaatttctaatcacctcacatttttcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGTGCTGAAGCCATCAGAAATTGCACCAGCCACCTCAGCATTGTTCGCCAA
species | Oryza sativa |
transcript | LOC_Os11g08300.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|29660175|gb|CB656450.1|CB656450
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|88433183|gb|CI569852.1|CI569852
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGEST: gi|58695219|gb|CK083906.1|CK083906
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|58604207|gb|CK014735.1|CK014735
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|29645892|gb|CB650899.1|CB650899
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|58594363|gb|CF992671.1|CF992671
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: TAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATGGAGGCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|33794991|gb|CF323375.1|CF323375
genomic: TAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: GCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|58591471|gb|CF989779.1|CF989779
genomic: GCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTGCT GGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|29643971|gb|CB648978.1|CB648978
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|58689115|gb|CK077802.1|CK077802
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|58691193|gb|CK079880.1|CK079880
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|58691525|gb|CK080212.1|CK080212
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|58695788|gb|CK084475.1|CK084475
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|58690002|gb|CK078689.1|CK078689
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|33675935|gb|CF304174.1|CF304174
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|29630144|gb|CB635153.1|CB635153
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|29681705|gb|CB677980.1|CB677980
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGEST: gi|33800254|gb|CF325992.1|CF325992
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
EST: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGTTTTTTCCCTTTCT TGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
genomic: AGAGCCTCTTGGTGTCGTCCTAGTCATCTCAGCATGGAACTACCCTTTCTgtaagttaaa ... tcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTG
aaaggcggtcctcactggttcgaatttctaatcacctcacatttttcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGTGCTGAAGCCATCAGAAATTGCACCAGCCACCTCAGCATTGTTCGCCAA
cctcacatttttcttt CT-rich tract
atttttcttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accttcgaaaatttaagacaagttcccaacccccacaccaccaccaaaggcggtcctcactggttcgaatttctaatcacctcacatttttcttttgtagTGCTCTCCATCGACCCAGTCATAGGAGCAATTGCTGCTGGGAATGCCGTTGTGCTGAAGCCATCAGAAATTGCACCAGCCACCTCAGCATTGTTCGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC